Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAFF19_RS05975 Genome accession   NZ_CP152407
Coordinates   1289006..1290223 (-) Length   405 a.a.
NCBI ID   WP_008905148.1    Uniprot ID   H0BYJ1
Organism   Acidovorax sp. FHTAMBA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1284006..1295223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF19_RS05945 (AAFF19_05945) - 1284959..1285831 (+) 873 WP_182118240.1 ATP-binding protein -
  AAFF19_RS05950 (AAFF19_05950) - 1285824..1286294 (+) 471 WP_182118241.1 NUDIX domain-containing protein -
  AAFF19_RS05955 (AAFF19_05955) - 1286391..1286609 (-) 219 WP_008905152.1 DNA gyrase inhibitor YacG -
  AAFF19_RS05960 (AAFF19_05960) zapD 1286660..1287415 (-) 756 WP_182118242.1 cell division protein ZapD -
  AAFF19_RS05965 (AAFF19_05965) coaE 1287501..1288121 (-) 621 WP_182118243.1 dephospho-CoA kinase -
  AAFF19_RS05970 (AAFF19_05970) - 1288125..1289006 (-) 882 WP_182118244.1 A24 family peptidase -
  AAFF19_RS05975 (AAFF19_05975) pilC 1289006..1290223 (-) 1218 WP_008905148.1 type II secretion system F family protein Machinery gene
  AAFF19_RS05980 (AAFF19_05980) pilB 1290242..1291981 (-) 1740 WP_182118245.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAFF19_RS05990 (AAFF19_05990) - 1292228..1293157 (-) 930 WP_182118386.1 polyprenyl synthetase family protein -
  AAFF19_RS05995 (AAFF19_05995) rplU 1293383..1293694 (+) 312 WP_005794184.1 50S ribosomal protein L21 -
  AAFF19_RS06000 (AAFF19_06000) rpmA 1293710..1293967 (+) 258 WP_008905145.1 50S ribosomal protein L27 -
  AAFF19_RS06005 (AAFF19_06005) cgtA 1294139..1295209 (+) 1071 WP_182118246.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44574.49 Da        Isoelectric Point: 9.4089

>NTDB_id=988917 AAFF19_RS05975 WP_008905148.1 1289006..1290223(-) (pilC) [Acidovorax sp. FHTAMBA]
MATAASRDIKDFVYEWEGKDRHGKIVRGEVRASGENQVQATLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQLATMMK
AGVPLLQSFDIVGRGNTNASVTKLLNDIRSDVETGTSLNAAFRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFSSFGADLPAPTLFVMGISEIFVKWWWLIFGVIGGGFFFFM
QAWKRNEKMQMFMDRVLLKIPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAMATEKIQQEVSTGT
SLTAAMGNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=988917 AAFF19_RS05975 WP_008905148.1 1289006..1290223(-) (pilC) [Acidovorax sp. FHTAMBA]
ATGGCAACAGCTGCATCACGCGATATCAAGGATTTTGTCTACGAGTGGGAAGGCAAGGACCGCCACGGTAAGATAGTCCG
TGGCGAAGTGCGGGCATCTGGGGAGAATCAGGTGCAAGCCACTTTGCGTCGGCAAGGGGTATTTCCCACCAAAATCAAGA
AACGCCGGATGCGGTCCGGCAAAAAGATCAAGCCCAAAGATATTGCCCTGTTCACCCGGCAGCTGGCAACCATGATGAAG
GCCGGTGTACCGCTACTGCAGTCCTTCGACATTGTCGGACGGGGAAACACCAATGCAAGCGTCACCAAGCTGCTCAACGA
CATCCGATCCGATGTCGAAACAGGTACTTCGCTGAATGCGGCGTTTCGCAAGCACCCCATGTATTTTGACAGCCTTTATT
GCAACCTTGTGGAGGCAGGTGAAGCAGCCGGTATTCTGGAGGCCCTTCTGGACCGGCTGGCTACCTACATGGAGAAGACC
GAGGCGATCAAATCCAAAATCAGATCAGCTTTGATGTACCCGATATCAGTGATTATCGTCGCGTTTGTGGTTGTGACGAT
TATCATGATCTTCGTGATTCCTGCGTTCAAGGAAGTTTTCAGTTCTTTTGGCGCAGATTTGCCGGCCCCTACCCTTTTCG
TCATGGGTATCAGTGAAATTTTCGTGAAATGGTGGTGGTTGATATTCGGCGTGATCGGTGGCGGATTTTTCTTTTTCATG
CAGGCATGGAAAAGAAATGAAAAAATGCAAATGTTCATGGACCGGGTATTGCTGAAGATCCCAATTTTTGGGGCGCTGAT
TGACAAGTCGTGCGTGGCACGCTGGACGCGCACCCTGTCCACCATGTTTGCTGCCGGTGTGCCGCTGGTGGAGGCACTGG
ACTCAGTGGGTGGAGCGTCCGGCAATTCGGTGTACGCCATGGCGACCGAAAAGATCCAGCAGGAGGTCTCTACCGGTACC
AGCCTCACCGCTGCCATGGGCAATGCGAACATCTTCCCGTCCATGGTCCTTCAGATGTGCGCGATCGGCGAGGAATCCGG
TTCCATTGACCACATGCTGGGCAAGGCGGCGGATTTCTATGAGGCCGAGGTGGACGAAATGGTGGCGGGCCTGTCCAGCC
TCATGGAACCCATCATCATCGTGTTTCTGGGTACGCTGATCGGGGGCATCGTGGTCTCCATGTACCTCCCCATCTTCAAG
CTTGGCCAAGTTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H0BYJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.96

99.753

0.538
  pilG Neisseria gonorrhoeae MS11

51.128

98.519

0.504
  pilG Neisseria meningitidis 44/76-A

50.877

98.519

0.501
  pilC Legionella pneumophila strain ERS1305867

48.744

98.272

0.479
  pilC Acinetobacter baylyi ADP1

48.744

98.272

0.479
  pilC Acinetobacter baumannii D1279779

48.111

98.025

0.472
  pilC Vibrio cholerae strain A1552

40.554

98.025

0.398
  pilC Vibrio campbellii strain DS40M4

39

98.765

0.385
  pilC Thermus thermophilus HB27

37.221

99.506

0.37

Multiple sequence alignment