Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAGD16_RS13220 Genome accession   NZ_CP152390
Coordinates   2872998..2874227 (+) Length   409 a.a.
NCBI ID   WP_377112305.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. M58     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2867998..2879227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGD16_RS13200 ampE 2869242..2870093 (-) 852 WP_013465931.1 beta-lactamase regulator AmpE -
  AAGD16_RS13205 ampD 2870381..2870926 (-) 546 WP_377112296.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AAGD16_RS13210 nadC 2871118..2871963 (+) 846 WP_377112299.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AAGD16_RS13215 - 2872475..2872933 (+) 459 WP_377112302.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AAGD16_RS13220 pilC 2872998..2874227 (+) 1230 WP_377112305.1 type II secretion system F family protein Machinery gene
  AAGD16_RS13225 pilD 2874438..2875349 (+) 912 WP_377112308.1 prepilin peptidase Machinery gene
  AAGD16_RS13230 coaE 2875352..2875981 (+) 630 WP_377112311.1 dephospho-CoA kinase -
  AAGD16_RS13235 pilB 2876116..2877792 (+) 1677 WP_024601729.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAGD16_RS13240 yacG 2877857..2878087 (+) 231 WP_008114915.1 DNA gyrase inhibitor YacG -
  AAGD16_RS13245 - 2878147..2878635 (-) 489 WP_377112315.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44261.15 Da        Isoelectric Point: 9.6989

>NTDB_id=988876 AAGD16_RS13220 WP_377112305.1 2872998..2874227(+) (pilC) [Pseudoalteromonas sp. M58]
MANKGNDKNIDVFQWTGVSARGKKLEGELTGSSIALVKAQLRKQGITPSKVKRKAKPLFGLQSVQKITPKDIALVTRQIA
TMLMAGVPLIQSIEMIGSGSTNKSVSKLMETIGDEVKAGQPLSMALRKHPRYFDDLYCDLVASGEQSGSLDKIFDRVALY
KEKSEALKSKIKKAMFYPAAVLVVAFIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVIAISEFMQANWWIALIGVVAFG
YLFKEAHLRSLKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGILVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=988876 AAGD16_RS13220 WP_377112305.1 2872998..2874227(+) (pilC) [Pseudoalteromonas sp. M58]
ATGGCAAACAAGGGCAATGATAAAAATATAGACGTATTCCAGTGGACAGGAGTAAGCGCTCGTGGCAAAAAACTCGAAGG
AGAACTCACTGGCTCAAGTATCGCTTTAGTAAAAGCCCAATTACGAAAGCAAGGTATTACCCCCTCAAAAGTAAAACGCA
AAGCCAAGCCGTTATTTGGTTTGCAAAGTGTGCAAAAAATCACCCCAAAAGATATTGCACTCGTCACACGACAAATCGCT
ACCATGCTGATGGCGGGTGTACCACTGATACAATCGATTGAGATGATAGGCTCAGGTTCTACCAATAAAAGTGTGAGTAA
ACTCATGGAAACCATTGGTGATGAGGTTAAAGCGGGGCAACCATTATCAATGGCACTCAGAAAGCACCCTCGTTATTTTG
ATGATTTATATTGCGATTTAGTGGCCTCAGGTGAGCAGTCAGGCTCTTTGGATAAAATATTTGACCGCGTCGCCCTTTAT
AAAGAAAAATCAGAAGCGCTGAAATCAAAAATTAAAAAAGCCATGTTTTATCCAGCGGCAGTTTTAGTTGTCGCATTCAT
TGTTACCTCTATATTACTGATATTTGTAGTACCGCAATTTCAAGATATTTTTGCTGGCTTTGGTGCCGAACTGCCCGCTT
TTACCTTATTCGTCATCGCCATTTCTGAATTTATGCAAGCCAACTGGTGGATAGCCCTAATTGGCGTTGTGGCATTTGGT
TATCTATTTAAAGAAGCACATTTAAGAAGTTTAAAACTGCGTGATGCCACTGACCGCGCCATACTTAAACTCCCAGTTAT
TGGCATGATACTCAATAAAGCAGCGGTCGCGCGCTATGCGCGTACTTTATCGACCACCTTTGCTGCCGGTGTACCATTGG
TGGATGCTTTGGATTCTGCAGCAGGTGCCTCAGGTAATGCGGTTTACCGTTATGCTATTTTAGAAATAAAAGCCGAGGTG
AGTTCAGGTAATCAAATGAACTGGGCGATGCGTAATTCAAAAATATTCCCTGATATGGTAATTCAAATGGTTGCCATTGG
TGAAGAGTCAGGATCGCTTGATGGCATGCTCGCAAAAGTAGCAACTATCTACGAGCAAGAAGTAGATGACGCGGTAGATG
GCCTATCGAGCTTACTTGAGCCGTTAATAATGGCGGTACTCGGTATATTAGTCGGTGGCTTAATTGTCGCCATGTACTTA
CCTATATTCCAACTAGGTTCAGTTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.07

97.311

0.623
  pilC Acinetobacter baylyi ADP1

56.5

97.8

0.553
  pilC Legionella pneumophila strain ERS1305867

55.147

99.756

0.55
  pilC Acinetobacter baumannii D1279779

55.164

97.066

0.535
  pilC Vibrio cholerae strain A1552

44.862

97.555

0.438
  pilC Vibrio campbellii strain DS40M4

42.893

98.044

0.421
  pilG Neisseria gonorrhoeae MS11

43.766

96.088

0.421
  pilG Neisseria meningitidis 44/76-A

43.734

95.599

0.418
  pilC Thermus thermophilus HB27

37.065

98.289

0.364

Multiple sequence alignment