Detailed information NTG0988877

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAGD16_RS13225
• Genome accession: NZ_CP152390
• Coordinates: 2874438..2875349 (+)
• Length: 303 a.a.
• NCBI ID: WP_377112308.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. M58
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2869438..2880349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGD16_RS13205	ampD	2870381..2870926 (-)	546	WP_377112296.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AAGD16_RS13210	nadC	2871118..2871963 (+)	846	WP_377112299.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AAGD16_RS13215	-	2872475..2872933 (+)	459	WP_377112302.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AAGD16_RS13220	pilC	2872998..2874227 (+)	1230	WP_377112305.1	type II secretion system F family protein	Machinery gene
AAGD16_RS13225	pilD	2874438..2875349 (+)	912	WP_377112308.1	prepilin peptidase	Machinery gene
AAGD16_RS13230	coaE	2875352..2875981 (+)	630	WP_377112311.1	dephospho-CoA kinase	-
AAGD16_RS13235	pilB	2876116..2877792 (+)	1677	WP_024601729.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAGD16_RS13240	yacG	2877857..2878087 (+)	231	WP_008114915.1	DNA gyrase inhibitor YacG	-
AAGD16_RS13245	-	2878147..2878635 (-)	489	WP_377112315.1	Spy/CpxP family protein refolding chaperone	-
AAGD16_RS13250	-	2878803..2879492 (+)	690	WP_016899750.1	response regulator transcription factor	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33428.81 Da
• Isoelectric Point: 7.8092

>NTDB_id=988877 AAGD16_RS13225 WP_377112308.1 2874438..2875349(+) (pilD) [Pseudoalteromonas sp. M58]
MQSLFIDITATMQNHLWFYLTTIGLVSLCIGSFLNVVIYRLPLMMQKEWQTECRLLLADELTNAKAKQTNAQTTDTFNLV
KPNSCCPKCKAAIKPWQNIPIISWLLLKGKCATCNNPISVRYPLVEAITAILSLVVAYTFGATEQALLYIVVTWALVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGW
QSLLTIILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=988877 AAGD16_RS13225 WP_377112308.1 2874438..2875349(+) (pilD) [Pseudoalteromonas sp. M58]
ATGCAAAGTCTTTTTATTGATATCACCGCCACGATGCAAAACCATTTATGGTTTTACTTAACCACTATTGGACTGGTGAG
TTTATGTATTGGTAGCTTTTTAAATGTGGTGATTTATCGCTTGCCGCTAATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAACGCTAAAGCGAAACAAACCAACGCACAAACGACTGACACGTTTAACTTAGTT
AAACCCAACTCATGTTGTCCTAAGTGCAAAGCGGCCATTAAACCGTGGCAAAATATCCCTATAATTAGCTGGTTATTATT
AAAAGGTAAATGCGCAACCTGTAACAACCCAATATCAGTACGTTACCCTCTCGTTGAGGCCATTACCGCTATTTTAAGTT
TAGTGGTTGCCTACACCTTTGGCGCAACAGAGCAGGCTTTATTGTACATTGTAGTTACTTGGGCGTTGGTAGCACTGACT
TTTATTGATATTGATCACATGCTACTGCCGGACCAGCTTACTTTGCCACTTTTATGGTTAGCGTTAATCGCCTCAGTTAT
GGGTTATACCATTGCCCCTAGCGATGCCATTATTGGCGCAGCATGTGGCTATTTAAGCTTATGGAGTGTGTTTTGGTTGT
TTAAATTAATAACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTGGCGGTGTTTGGCGCATTGCTAGGTTGG
CAATCGTTATTGACCATTATTTTACTCTCAAGCGTAGTTGGCGCTGTAATTGGCATTGCTCTACTGAGCATTCAAGGTAA
AGACAAAGCAACGCCCATTCCTTTTGGCCCTTACTTAGCAATAGCCGGCTGGATCACTATGCTATGGGGAACGCAACTGC
AAAACAGCTATTTTAATTTTATTGGCTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	50.512	96.7	0.488
pilD	Acinetobacter nosocomialis M2	50.512	96.7	0.488
pilD	Vibrio cholerae strain A1552	51.22	94.719	0.485
pilD	Vibrio campbellii strain DS40M4	50	96.37	0.482
pilD	Neisseria gonorrhoeae MS11	45.522	88.449	0.403