Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAGQ88_RS23145 Genome accession   NZ_CP152388
Coordinates   5172390..5173607 (+) Length   405 a.a.
NCBI ID   WP_342653693.1    Uniprot ID   -
Organism   Pseudomonas sp. F3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5167390..5178607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ88_RS23130 (AAGQ88_23130) - 5168540..5169922 (-) 1383 WP_342653690.1 O-antigen ligase family protein -
  AAGQ88_RS23135 (AAGQ88_23135) - 5170035..5170466 (-) 432 WP_342653691.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AAGQ88_RS23140 (AAGQ88_23140) pilB 5170693..5172387 (+) 1695 WP_342653692.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAGQ88_RS23145 (AAGQ88_23145) pilC 5172390..5173607 (+) 1218 WP_342653693.1 type II secretion system F family protein Machinery gene
  AAGQ88_RS23150 (AAGQ88_23150) pilD 5173609..5174481 (+) 873 WP_342653694.1 A24 family peptidase Machinery gene
  AAGQ88_RS23155 (AAGQ88_23155) coaE 5174481..5175110 (+) 630 WP_342655871.1 dephospho-CoA kinase -
  AAGQ88_RS23160 (AAGQ88_23160) yacG 5175110..5175313 (+) 204 WP_062378727.1 DNA gyrase inhibitor YacG -
  AAGQ88_RS23165 (AAGQ88_23165) - 5175383..5176069 (-) 687 WP_342653695.1 energy-coupling factor ABC transporter permease -
  AAGQ88_RS23170 (AAGQ88_23170) - 5176231..5176875 (-) 645 WP_342653696.1 hydrolase -
  AAGQ88_RS23175 (AAGQ88_23175) - 5177034..5177933 (+) 900 WP_285426253.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44226.31 Da        Isoelectric Point: 10.1186

>NTDB_id=988843 AAGQ88_RS23145 WP_342653693.1 5172390..5173607(+) (pilC) [Pseudomonas sp. F3-2]
MATKAVKVSVYTWEGLDKKGVKQKGEINGHNPALVKAQLRKQGINPTKVRKKAVSIFGSGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGSDNPNMRKLVDDIKQEVAAGHSFATALRQKPQYFDDLFCNLVDAGEQAGALESLLDRVATYKEKT
EFLKAKIKKAMTYPIAVVIVAIIVSGILLIKVVPQFQSVFAGFGAKLPAFTLMVIGLSEIVQSYWYILLGAMLVAFMAFR
KAYKTSEKFRDRIDRMLLKVPVIGPLLFKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVHKVKQDVSTGM
QLNFSMRSTGVFPMLAVQMTAIGEESGALDSMLDKVATYYEEEVDNMVDSLTSLMEPMIMAVLGIIVGGLVIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=988843 AAGQ88_RS23145 WP_342653693.1 5172390..5173607(+) (pilC) [Pseudomonas sp. F3-2]
ATGGCGACCAAAGCAGTAAAAGTCAGCGTCTACACCTGGGAGGGGCTCGACAAGAAAGGCGTCAAACAAAAGGGCGAAAT
CAACGGCCACAACCCCGCGCTCGTCAAAGCCCAGTTGCGCAAGCAAGGCATCAACCCGACGAAAGTCCGGAAGAAAGCCG
TTTCGATCTTCGGCTCCGGCAAGAAGATCAAACCGCTGGACATCGCGTTCTTCAGTCGCCAGATGGCAACGATGATGAAA
GCCGGCGTTCCTTTATTGCAGTCGTTCGACATTATCAGCGAAGGCTCCGATAACCCGAACATGCGCAAACTCGTTGACGA
CATCAAACAGGAAGTGGCTGCCGGGCACAGTTTTGCCACGGCCTTGCGGCAGAAGCCTCAGTATTTCGACGACCTGTTTT
GCAACCTTGTCGACGCGGGCGAGCAAGCCGGTGCGCTTGAGTCGCTGCTCGATCGAGTGGCCACCTACAAAGAAAAGACC
GAGTTCCTCAAAGCCAAGATTAAAAAAGCCATGACCTACCCGATTGCCGTGGTCATCGTGGCGATCATCGTGAGCGGGAT
TCTGCTGATCAAAGTGGTGCCGCAGTTTCAGTCCGTGTTCGCCGGATTTGGCGCGAAGCTGCCCGCTTTTACGCTGATGG
TCATTGGTCTTTCGGAAATCGTTCAGAGTTATTGGTACATCCTTCTGGGCGCCATGCTGGTCGCTTTTATGGCCTTCCGC
AAAGCCTACAAGACCTCGGAAAAGTTCAGGGATCGCATCGACCGCATGCTGTTGAAGGTACCGGTGATCGGCCCGCTTCT
GTTCAAATCGGCGGTCGCCCGTTTTGCCCGGACGCTTTCAACCACCTTCGCTGCCGGTGTGCCACTGGTCGATGCTCTCG
ACTCAGTTGCTGGCGCGACCGGCAACGTGGTTTTCCGCAACGCCGTGCATAAGGTCAAACAAGACGTTTCCACCGGTATG
CAGCTCAACTTTTCGATGCGCAGCACGGGCGTCTTCCCGATGCTGGCCGTGCAGATGACCGCCATCGGCGAGGAGTCCGG
CGCGCTGGATTCGATGCTCGATAAGGTCGCGACGTATTACGAAGAGGAAGTCGACAACATGGTCGACAGCCTCACCAGCC
TGATGGAGCCAATGATCATGGCCGTCCTCGGCATCATCGTCGGCGGGCTCGTGATCGCCATGTACCTGCCCATCTTCCAG
CTCGGAAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.531

100

0.775
  pilC Acinetobacter baylyi ADP1

59.314

100

0.598
  pilC Acinetobacter baumannii D1279779

59.653

99.753

0.595
  pilC Legionella pneumophila strain ERS1305867

55.051

97.778

0.538
  pilG Neisseria gonorrhoeae MS11

44.241

94.321

0.417
  pilG Neisseria meningitidis 44/76-A

44.241

94.321

0.417
  pilC Vibrio campbellii strain DS40M4

41.523

100

0.417
  pilC Vibrio cholerae strain A1552

41.481

100

0.415
  pilC Thermus thermophilus HB27

38.653

99.012

0.383

Multiple sequence alignment