Detailed information NTG0988844

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAGQ88_RS23150
• Genome accession: NZ_CP152388
• Coordinates: 5173609..5174481 (+)
• Length: 290 a.a.
• NCBI ID: WP_342653694.1
• Uniprot ID: -
• Organism: Pseudomonas sp. F3-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5168609..5179481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGQ88_RS23135 (AAGQ88_23135)	-	5170035..5170466 (-)	432	WP_342653691.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AAGQ88_RS23140 (AAGQ88_23140)	pilB	5170693..5172387 (+)	1695	WP_342653692.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAGQ88_RS23145 (AAGQ88_23145)	pilC	5172390..5173607 (+)	1218	WP_342653693.1	type II secretion system F family protein	Machinery gene
AAGQ88_RS23150 (AAGQ88_23150)	pilD	5173609..5174481 (+)	873	WP_342653694.1	A24 family peptidase	Machinery gene
AAGQ88_RS23155 (AAGQ88_23155)	coaE	5174481..5175110 (+)	630	WP_342655871.1	dephospho-CoA kinase	-
AAGQ88_RS23160 (AAGQ88_23160)	yacG	5175110..5175313 (+)	204	WP_062378727.1	DNA gyrase inhibitor YacG	-
AAGQ88_RS23165 (AAGQ88_23165)	-	5175383..5176069 (-)	687	WP_342653695.1	energy-coupling factor ABC transporter permease	-
AAGQ88_RS23170 (AAGQ88_23170)	-	5176231..5176875 (-)	645	WP_342653696.1	hydrolase	-
AAGQ88_RS23175 (AAGQ88_23175)	-	5177034..5177933 (+)	900	WP_285426253.1	LysR family transcriptional regulator	-
AAGQ88_RS23180 (AAGQ88_23180)	-	5178110..5179063 (-)	954	WP_342653697.1	2-hydroxyacid dehydrogenase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31930.26 Da
• Isoelectric Point: 8.2389

>NTDB_id=988844 AAGQ88_RS23150 WP_342653694.1 5173609..5174481(+) (pilD) [Pseudomonas sp. F3-2]
MSVLDLLASSPLAFVLCALVLGLLVGSFINVVVYRLPKMMLQDWKAQAREVLELPAEPKPETFNLLLPHSRCPHCAHRIR
AWENLPVVSYLFLGGKCSRCKAPISKRYPVVELVCGLLSAFVAWHFGFGWQAAAVLVLSWGLLSMSLIDADHQLLPDVIV
LPLLWLGLIVNAFGLFASLTDALWGAVFGYLVLWAVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLILLRLRNVETSTPIPFGPYLAIAGWIALLWGDQITTSYLQIAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=988844 AAGQ88_RS23150 WP_342653694.1 5173609..5174481(+) (pilD) [Pseudomonas sp. F3-2]
ATGTCTGTTCTTGACCTTCTGGCCAGCTCCCCGCTGGCCTTTGTTCTGTGCGCGCTGGTTTTGGGGCTGCTGGTGGGCAG
CTTCATCAACGTCGTGGTTTATCGCCTGCCCAAGATGATGTTGCAGGACTGGAAGGCTCAGGCGCGCGAAGTGCTGGAAC
TCCCCGCCGAGCCGAAACCCGAGACCTTCAACCTGCTGCTGCCTCATTCTCGCTGCCCGCATTGCGCGCACCGAATCCGC
GCCTGGGAGAATCTGCCGGTCGTCAGCTACCTGTTTCTGGGCGGCAAATGCTCCCGCTGCAAGGCGCCCATCAGCAAGCG
TTATCCCGTCGTCGAACTGGTGTGCGGATTACTGTCGGCTTTCGTCGCCTGGCATTTCGGCTTCGGCTGGCAGGCTGCGG
CCGTGCTGGTGTTGAGCTGGGGCCTGCTGTCGATGAGCCTGATCGACGCCGATCACCAATTGCTGCCGGACGTGATCGTG
CTGCCGCTGCTGTGGCTTGGGCTGATCGTCAATGCGTTCGGGCTTTTTGCTTCGTTGACCGATGCGCTGTGGGGCGCGGT
GTTCGGGTATCTGGTGCTGTGGGCAGTGTTCTGGCTATTCAAGCTGGTGACTGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAATTGCTGGCCATGTTGGGCGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATCTTGCTGTCCTCGCTCGTTGGC
GCGGTGTTGGGCCTGATTCTGCTGCGTTTGCGCAACGTCGAGACCAGCACGCCGATTCCCTTCGGCCCTTATCTGGCTAT
CGCGGGGTGGATCGCATTGCTCTGGGGTGATCAAATAACCACTTCGTATTTGCAGATCGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.297	97.586	0.51
pilD	Vibrio campbellii strain DS40M4	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	51.825	94.483	0.49
pilD	Acinetobacter nosocomialis M2	51.095	94.483	0.483
pilD	Neisseria gonorrhoeae MS11	49.275	95.172	0.469