Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAG689_RS17020 Genome accession   NZ_CP152342
Coordinates   3460175..3461392 (+) Length   405 a.a.
NCBI ID   WP_406622995.1    Uniprot ID   -
Organism   Acidovorax sp. SDU_ACID1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3455175..3466392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG689_RS16980 - 3455205..3455546 (-) 342 WP_406622991.1 hypothetical protein -
  AAG689_RS16985 - 3455516..3455896 (-) 381 WP_406622992.1 GTPase -
  AAG689_RS16990 - 3455864..3456300 (-) 437 Protein_3342 hypothetical protein -
  AAG689_RS16995 rpmA 3456374..3456631 (-) 258 WP_011804286.1 50S ribosomal protein L27 -
  AAG689_RS17000 rplU 3456647..3456958 (-) 312 WP_024001616.1 50S ribosomal protein L21 -
  AAG689_RS17005 - 3457127..3458110 (+) 984 WP_406622993.1 polyprenyl synthetase family protein -
  AAG689_RS17015 pilB 3458419..3460155 (+) 1737 WP_406622994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAG689_RS17020 pilC 3460175..3461392 (+) 1218 WP_406622995.1 type II secretion system F family protein Machinery gene
  AAG689_RS17025 pilD 3461396..3462274 (+) 879 WP_406622996.1 prepilin peptidase Machinery gene
  AAG689_RS17030 coaE 3462277..3462888 (+) 612 WP_406622997.1 dephospho-CoA kinase -
  AAG689_RS17035 zapD 3462930..3463685 (+) 756 WP_406622998.1 cell division protein ZapD -
  AAG689_RS17040 - 3463691..3463912 (+) 222 WP_406622999.1 DNA gyrase inhibitor YacG -
  AAG689_RS17045 - 3463976..3464401 (-) 426 WP_020229073.1 NUDIX domain-containing protein -
  AAG689_RS17050 - 3464398..3465270 (-) 873 WP_406623000.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44557.39 Da        Isoelectric Point: 9.4872

>NTDB_id=988492 AAG689_RS17020 WP_406622995.1 3460175..3461392(+) (pilC) [Acidovorax sp. SDU_ACID1]
MATATSRDIKDFVFEWEGKDRSGKVVRGEVRASGENQVKATLRRQGVLPTKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNANASVTKLLNDIRSDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILETLLDRLATYMEKT
EAIKGKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVSYWYLIFGVIGGGFYFFM
QAWRRNEKMQRFMDRLLLKLPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAIATDKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEQEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=988492 AAG689_RS17020 WP_406622995.1 3460175..3461392(+) (pilC) [Acidovorax sp. SDU_ACID1]
ATGGCAACCGCAACATCGAGGGACATCAAGGATTTCGTCTTTGAGTGGGAGGGCAAGGACCGCAGCGGAAAGGTCGTCCG
CGGCGAGGTACGCGCTTCGGGCGAGAACCAGGTCAAGGCCACCCTGCGGCGCCAGGGCGTGCTGCCCACGAAGATCAAGA
AGCGCCGGATGCGCTCCGGCAAGAAGATCAAGCCCAAGGACATCGCGCTCTTCACGCGCCAGATGGCCACCATGATGAAG
GCGGGCGTGCCCTTGCTGCAGGCCTTCGACATCGTAGGGCGCGGCAATGCCAACGCCAGCGTCACCAAGCTGCTCAACGA
CATCCGCAGCGACGTGGAGACGGGTACTTCGCTGAACGCGGCCTTCCGCAAGTACCCCATGTACTTCGACAGCCTTTACT
GCAACCTCGTCGAGGCGGGCGAGGCGGCCGGCATCCTGGAAACGCTGCTGGACCGGCTGGCGACTTACATGGAAAAGACG
GAGGCCATCAAGGGCAAGATCCGCTCGGCGCTGATGTACCCAATCTCGGTGATCATCGTCGCGTTCGTGGTGGTGACCAT
CATCATGATCTTCGTGATCCCCGCCTTCAAGGAGGTGTTCACCTCGTTCGGTGCCGATCTGCCGGCTCCCACGTTGTTCG
TGATGGCGATCAGTGAATTCTTCGTGTCCTATTGGTACCTGATCTTCGGCGTGATCGGCGGCGGCTTCTACTTCTTCATG
CAGGCATGGAGACGCAACGAGAAGATGCAACGCTTCATGGACCGCCTGCTGCTGAAGCTGCCCATCTTCGGCGCATTGAT
CGACAAGTCCTGCGTCGCGCGCTGGACGCGCACGCTGTCCACCATGTTCGCTGCCGGAGTGCCGCTGGTGGAGGCGCTGG
ATTCGGTGGGCGGCGCCTCCGGCAACTCCGTGTACGCGATCGCCACGGACAAGATCCAGCAGGAAGTCTCCACCGGCACA
AGCCTCACGGCCGCCATGGGCAATGCCAACGTCTTCCCCTCGATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCGGG
CTCCATCGACCACATGCTGGGCAAGGCGGCCGACTTCTACGAGCAGGAAGTCGATGAAATGGTGGCCGGGCTGTCCAGCC
TGATGGAACCTATCATCATCGTGTTCCTCGGGACGATCATCGGCGGCATCGTCGTGTCCATGTACCTGCCGATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.726

99.259

0.543
  pilG Neisseria gonorrhoeae MS11

52.273

97.778

0.511
  pilG Neisseria meningitidis 44/76-A

52.02

97.778

0.509
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Legionella pneumophila strain ERS1305867

50

98.272

0.491
  pilC Acinetobacter baumannii D1279779

49.118

98.025

0.481
  pilC Vibrio cholerae strain A1552

41.058

98.025

0.402
  pilC Vibrio campbellii strain DS40M4

39.401

99.012

0.39
  pilC Thermus thermophilus HB27

37.831

100

0.388

Multiple sequence alignment