Detailed information NTG0988493

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAG689_RS17025
• Genome accession: NZ_CP152342
• Coordinates: 3461396..3462274 (+)
• Length: 292 a.a.
• NCBI ID: WP_406622996.1
• Uniprot ID: -
• Organism: Acidovorax sp. SDU_ACID1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3456396..3467274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG689_RS17000	rplU	3456647..3456958 (-)	312	WP_024001616.1	50S ribosomal protein L21	-
AAG689_RS17005	-	3457127..3458110 (+)	984	WP_406622993.1	polyprenyl synthetase family protein	-
AAG689_RS17015	pilB	3458419..3460155 (+)	1737	WP_406622994.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAG689_RS17020	pilC	3460175..3461392 (+)	1218	WP_406622995.1	type II secretion system F family protein	Machinery gene
AAG689_RS17025	pilD	3461396..3462274 (+)	879	WP_406622996.1	prepilin peptidase	Machinery gene
AAG689_RS17030	coaE	3462277..3462888 (+)	612	WP_406622997.1	dephospho-CoA kinase	-
AAG689_RS17035	zapD	3462930..3463685 (+)	756	WP_406622998.1	cell division protein ZapD	-
AAG689_RS17040	-	3463691..3463912 (+)	222	WP_406622999.1	DNA gyrase inhibitor YacG	-
AAG689_RS17045	-	3463976..3464401 (-)	426	WP_020229073.1	NUDIX domain-containing protein	-
AAG689_RS17050	-	3464398..3465270 (-)	873	WP_406623000.1	ATP-binding protein	-
AAG689_RS17055	argJ	3465325..3466554 (-)	1230	WP_406623001.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 31373.83 Da
• Isoelectric Point: 6.8138

>NTDB_id=988493 AAG689_RS17025 WP_406622996.1 3461396..3462274(+) (pilD) [Acidovorax sp. SDU_ACID1]
MTGSSQWDAALVGILGLLIGSFLNVVIHRLPRMMERQWAAECDQYARDAGLLPEGAAPVPTETFNLWAPRSRCPSCGHEV
RWYENIPVLSYIGLRGRCSGCGTRISARYPLVELLTGALFYACAAHWGWSAATAAWCGFCAALVALAFIDWDTTLLPDDI
TLPLLWAGLAAATLRWIDVTPADAILGAVGGYLSLWAVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILIASV
IGALVGIAMKLASHLREGKYVPFGPFLAGAGIAAMLWGPQQIMQAILALLGL

Nucleotide

• Length: 879 bp

>NTDB_id=988493 AAG689_RS17025 WP_406622996.1 3461396..3462274(+) (pilD) [Acidovorax sp. SDU_ACID1]
ATGACGGGCTCTTCGCAATGGGACGCCGCGTTGGTCGGCATCCTGGGCCTGCTGATCGGCAGTTTTCTCAACGTGGTGAT
CCACCGGCTGCCCCGCATGATGGAGCGCCAGTGGGCAGCGGAGTGCGACCAGTACGCACGCGATGCCGGCCTGCTTCCCG
AAGGGGCCGCCCCCGTTCCCACGGAGACTTTCAACCTCTGGGCGCCACGCTCCCGCTGCCCCTCCTGCGGGCATGAGGTG
CGCTGGTACGAGAACATCCCAGTACTCAGCTACATCGGCCTGCGCGGACGCTGCTCGGGCTGCGGCACGCGCATCAGCGC
ACGCTATCCGCTGGTGGAACTGCTCACGGGCGCGCTGTTCTACGCCTGCGCGGCCCACTGGGGCTGGTCCGCGGCCACGG
CAGCCTGGTGCGGCTTCTGTGCGGCCCTGGTGGCCCTGGCCTTCATCGACTGGGACACCACCCTCCTGCCGGACGACATT
ACCCTGCCCCTGCTCTGGGCTGGCCTGGCCGCAGCCACGCTGCGATGGATCGACGTCACGCCGGCCGACGCCATCCTGGG
CGCCGTGGGCGGCTACCTGTCGCTCTGGGCCGTGTACTGGGGCTTCAAGCTCGCGACCGGCAAGGAAGGCATGGGCTATG
GCGACTTCAAGCTGTTCGCCGCACTGGGCGCATGGTTCGGCTGGCAGGCGCTGGTGCCCATCATCCTGATCGCATCGGTC
ATCGGAGCGCTCGTGGGCATTGCGATGAAGCTGGCCAGCCACCTGCGCGAGGGCAAGTACGTCCCCTTCGGCCCCTTCCT
CGCGGGCGCGGGAATCGCCGCCATGCTCTGGGGCCCGCAGCAGATCATGCAGGCCATCCTGGCCCTGCTGGGGCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.714	95.89	0.486
pilD	Vibrio cholerae strain A1552	50.719	95.205	0.483
pilD	Neisseria gonorrhoeae MS11	47.94	91.438	0.438
pilD	Acinetobacter nosocomialis M2	45.652	94.521	0.432
pilD	Acinetobacter baumannii D1279779	45.652	94.521	0.432