Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAD080_RS14115 Genome accession   NZ_CP152307
Coordinates   3104761..3106071 (-) Length   436 a.a.
NCBI ID   WP_342607687.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3099761..3111071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS14095 - 3100497..3101318 (-) 822 WP_342607685.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  AAD080_RS14100 - 3101389..3102900 (-) 1512 WP_342607686.1 AAA family ATPase -
  AAD080_RS14105 aroB 3102950..3104029 (-) 1080 WP_068715375.1 3-dehydroquinate synthase -
  AAD080_RS14110 aroK 3104056..3104574 (-) 519 WP_068716087.1 shikimate kinase AroK -
  AAD080_RS14115 pilQ 3104761..3106071 (-) 1311 WP_342607687.1 type IV pilus secretin PilQ Machinery gene
  AAD080_RS14120 - 3106068..3106526 (-) 459 WP_342607688.1 hypothetical protein -
  AAD080_RS14125 - 3106529..3107092 (-) 564 WP_342607689.1 hypothetical protein -
  AAD080_RS14130 - 3107092..3107637 (-) 546 WP_342607690.1 PilN domain-containing protein -
  AAD080_RS14135 pilM 3107621..3108571 (-) 951 WP_342607691.1 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 47824.22 Da        Isoelectric Point: 7.4700

>NTDB_id=988235 AAD080_RS14115 WP_342607687.1 3104761..3106071(-) (pilQ) [Vibrio tritonius strain JCM 16457 isolate MA35]
MKQNLLLCLIVKSAVVILSFAWMSSFAFAADEKEEPISLQLQDAEVRRLLVLLAQQRHMNLVMSDSVAGNVSVNLDNVSW
NKALNIILKMKGLAHKEESGVLWIAPRDELVNMEKEQRQIRLDKQPLSYLRVPIHYALAKNIADMVAKSGLLSPRGSVQI
DKRTNALLLKETAQGLKELQAFIQSLDVPMKQVLIEARIVTMSQGNLDELGVRWGIFQSNQTNLAGSLEGLQGADSEDIM
GQLNVHLPSASARASSIAFQVAKLGADTLLDLELSALQSESKAEIISSPRLVTTNKKPAYIEQGTEIPYLEAASSGATSV
TFRKAVLSLKVTPQITPDNRLILDLNVTQDRPGNAVSSGTGDAVTIQTQRIGTQVLVNNGETVVLGGIYQYSTIHHVDKV
PLLGDLPWIGSLFRRTYQQSGKNELLIFVTPKVFIQ

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=988235 AAD080_RS14115 WP_342607687.1 3104761..3106071(-) (pilQ) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGAAACAGAACCTTTTATTGTGCTTAATAGTTAAGTCGGCTGTCGTCATTTTATCCTTTGCATGGATGAGTTCGTTTGC
TTTCGCTGCAGATGAAAAAGAGGAGCCTATTTCATTACAACTGCAAGATGCAGAAGTACGTCGATTGCTCGTATTACTGG
CTCAGCAACGTCACATGAACTTGGTGATGTCAGACAGTGTGGCTGGAAATGTGTCGGTGAACCTAGATAATGTTAGCTGG
AATAAGGCTCTGAACATTATCCTAAAAATGAAAGGTCTAGCCCACAAAGAAGAGAGCGGAGTGTTATGGATAGCACCACG
CGATGAGCTGGTAAACATGGAGAAAGAGCAGCGGCAAATTCGCTTGGATAAACAGCCGTTAAGCTATTTACGCGTTCCAA
TTCATTATGCTCTTGCCAAGAATATCGCCGACATGGTGGCCAAAAGCGGGCTACTATCACCACGAGGTTCCGTGCAAATT
GATAAACGCACCAATGCATTACTGCTCAAAGAAACAGCGCAAGGATTAAAAGAGCTTCAAGCATTTATTCAGTCATTGGA
TGTACCAATGAAACAGGTCTTAATCGAAGCGCGTATTGTTACCATGAGCCAAGGTAATCTTGATGAACTTGGAGTTCGCT
GGGGGATTTTTCAAAGTAATCAAACGAACCTAGCAGGTTCATTAGAAGGATTGCAAGGTGCCGACTCTGAAGACATCATG
GGCCAACTTAATGTGCATCTTCCTTCTGCATCTGCTCGTGCAAGCAGTATTGCTTTTCAAGTGGCTAAGTTGGGGGCTGA
TACTTTGCTGGACCTTGAGTTATCCGCGTTACAAAGTGAATCAAAGGCTGAAATCATTTCGAGCCCTCGTTTGGTAACGA
CTAATAAGAAGCCTGCTTATATTGAGCAAGGTACAGAAATTCCCTATCTGGAAGCGGCATCTAGTGGAGCAACCTCGGTC
ACTTTTCGCAAAGCGGTTCTGAGTTTGAAAGTGACACCGCAAATCACGCCAGATAATCGTTTGATTCTTGATCTTAACGT
AACTCAAGACCGTCCGGGTAATGCGGTGAGTTCAGGTACGGGCGATGCTGTGACCATTCAAACACAAAGAATTGGTACTC
AAGTGTTAGTGAATAACGGTGAAACGGTCGTTTTGGGTGGTATTTATCAATACAGTACCATTCATCATGTGGACAAGGTT
CCTTTGTTGGGGGATCTACCTTGGATTGGTTCATTATTTCGGAGAACTTATCAACAAAGTGGCAAAAATGAGCTGCTAAT
ATTTGTGACGCCGAAAGTGTTCATTCAATGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(276-433)

Bacterial type II/III secretion system short domain (Secretin_N)

(132-192)

Secretin and TonB N terminus short domain (STN)

(60-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

59.251

97.936

0.58
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

58.605

98.624

0.578
  pilQ Vibrio cholerae strain A1552

58.605

98.624

0.578
  comQ Acinetobacter baylyi ADP1

40

100

0.404
  pilQ Legionella pneumophila strain Lp02

42.615

94.725

0.404
  pilQ Legionella pneumophila strain ERS1305867

42.615

94.725

0.404
  comE Haemophilus influenzae Rd KW20

39.456

100

0.399
  pilQ Pseudomonas aeruginosa PAK

38.427

100

0.392
  comE Haemophilus influenzae 86-028NP

38.549

100

0.39
  pilQ Acinetobacter baumannii strain A118

37.061

100

0.388
  pilQ Acinetobacter baumannii D1279779

37.061

100

0.388
  comE Glaesserella parasuis strain SC1401

38.369

95.642

0.367

Multiple sequence alignment