Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | R8568_RS07180 | Genome accession | NZ_AP026931 |
| Coordinates | 1422947..1423417 (-) | Length | 156 a.a. |
| NCBI ID | WP_000609611.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain PZ900701541 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1417947..1428417
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8568_RS07150 (PC1520_14180) | - | 1418522..1419457 (-) | 936 | WP_000036043.1 | manganese-dependent inorganic pyrophosphatase | - |
| R8568_RS07155 (PC1520_14190) | - | 1419528..1419827 (-) | 300 | WP_000349602.1 | GIY-YIG nuclease family protein | - |
| R8568_RS07160 (PC1520_14200) | - | 1419817..1420566 (-) | 750 | WP_000390784.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| R8568_RS07165 (PC1520_14210) | - | 1420620..1420979 (-) | 360 | WP_000689596.1 | S1 RNA-binding domain-containing protein | - |
| R8568_RS07170 (PC1520_14220) | - | 1420981..1422381 (-) | 1401 | WP_000339014.1 | bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase | - |
| R8568_RS07175 (PC1520_14230) | rpsR | 1422676..1422915 (-) | 240 | WP_000068664.1 | 30S ribosomal protein S18 | - |
| R8568_RS07180 (PC1520_14240) | ssbA | 1422947..1423417 (-) | 471 | WP_000609611.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| R8568_RS07185 (PC1520_14250) | rpsF | 1423429..1423719 (-) | 291 | WP_001151785.1 | 30S ribosomal protein S6 | - |
| R8568_RS07190 (PC1520_14260) | asnS | 1423872..1425215 (-) | 1344 | WP_000167151.1 | asparagine--tRNA ligase | - |
| R8568_RS07195 (PC1520_14270) | - | 1425234..1425599 (-) | 366 | WP_000565220.1 | VOC family protein | - |
| R8568_RS07200 (PC1520_14280) | - | 1425592..1426779 (-) | 1188 | WP_000777784.1 | pyridoxal phosphate-dependent aminotransferase | - |
| R8568_RS07205 (PC1520_14290) | - | 1426776..1427264 (-) | 489 | WP_000747252.1 | DUF5590 domain-containing protein | - |
| R8568_RS07210 (PC1520_14300) | - | 1427585..1428133 (+) | 549 | WP_000039617.1 | NADPH-dependent FMN reductase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17381.24 Da Isoelectric Point: 5.2065
>NTDB_id=98821 R8568_RS07180 WP_000609611.1 1422947..1423417(-) (ssbA) [Streptococcus pneumoniae strain PZ900701541]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVRESHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVRESHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=98821 R8568_RS07180 WP_000609611.1 1422947..1423417(-) (ssbA) [Streptococcus pneumoniae strain PZ900701541]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGAGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGAGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.672 |
100 |
0.609 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.59 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.282 |
75 |
0.385 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
67.949 |
0.378 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.427 |
75 |
0.378 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
54.128 |
69.872 |
0.378 |
| ssb | Glaesserella parasuis strain SC1401 |
32.022 |
100 |
0.365 |