Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | AAEU35_RS05260 | Genome accession | NZ_CP152294 |
| Coordinates | 1086244..1086633 (-) | Length | 129 a.a. |
| NCBI ID | WP_010905314.1 | Uniprot ID | S6EQX8 |
| Organism | Lactococcus lactis strain Q13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1080148..1086633 | 1086244..1086633 | within | 0 |
Gene organization within MGE regions
Location: 1080148..1086633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAEU35_RS05230 | tmk | 1080148..1080783 (-) | 636 | WP_012897230.1 | dTMP kinase | - |
| AAEU35_RS05235 | yycF | 1080961..1081662 (+) | 702 | WP_003131580.1 | response regulator YycF | - |
| AAEU35_RS05240 | - | 1081655..1083097 (+) | 1443 | WP_012897229.1 | cell wall metabolism sensor histidine kinase WalK | - |
| AAEU35_RS05245 | - | 1083266..1084078 (+) | 813 | WP_003131583.1 | MBL fold metallo-hydrolase | - |
| AAEU35_RS05250 | groL | 1084123..1085751 (-) | 1629 | WP_003131585.1 | chaperonin GroEL | - |
| AAEU35_RS05255 | groES | 1085840..1086124 (-) | 285 | WP_003131589.1 | co-chaperone GroES | - |
| AAEU35_RS05260 | ssbB | 1086244..1086633 (-) | 390 | WP_010905314.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14672.73 Da Isoelectric Point: 8.3705
>NTDB_id=988174 AAEU35_RS05260 WP_010905314.1 1086244..1086633(-) (ssbB) [Lactococcus lactis strain Q13]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=988174 AAEU35_RS05260 WP_010905314.1 1086244..1086633(-) (ssbB) [Lactococcus lactis strain Q13]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
90.698 |
100 |
0.907 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60.769 |
100 |
0.612 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.923 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
56.154 |
100 |
0.566 |
| ssbA | Streptococcus mutans UA159 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
43.75 |
86.822 |
0.38 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.762 |
81.395 |
0.364 |