Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AAB158_RS25690 Genome accession   NZ_CP152291
Coordinates   5304086..5304448 (-) Length   120 a.a.
NCBI ID   WP_192207233.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain IMGN5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5299086..5309448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB158_RS25675 (AAB158_25675) - 5299942..5301558 (-) 1617 WP_192207230.1 ABC transporter substrate-binding protein -
  AAB158_RS25680 (AAB158_25680) - 5301601..5302569 (-) 969 WP_192207231.1 dipeptide ABC transporter ATP-binding protein -
  AAB158_RS25685 (AAB158_25685) - 5302550..5303554 (-) 1005 WP_192207232.1 ABC transporter ATP-binding protein -
  AAB158_RS25690 (AAB158_25690) ssbB 5304086..5304448 (-) 363 WP_192207233.1 single-stranded DNA-binding protein Machinery gene
  AAB158_RS25695 (AAB158_25695) - 5304809..5305243 (+) 435 WP_192207234.1 YwpF family protein -
  AAB158_RS25700 (AAB158_25700) - 5305360..5305647 (-) 288 WP_192207235.1 hypothetical protein -
  AAB158_RS25705 (AAB158_25705) fabZ 5305936..5306364 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AAB158_RS25710 (AAB158_25710) - 5306493..5306747 (-) 255 WP_137016469.1 DNA-directed RNA polymerase subunit beta -
  AAB158_RS25715 (AAB158_25715) - 5306911..5307753 (-) 843 WP_342614824.1 flagellar hook-basal body protein -
  AAB158_RS25720 (AAB158_25720) - 5307807..5308646 (-) 840 WP_342614825.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13660.51 Da        Isoelectric Point: 9.6262

>NTDB_id=988132 AAB158_RS25690 WP_192207233.1 5304086..5304448(-) (ssbB) [Peribacillus frigoritolerans strain IMGN5]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAINRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGATIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGSKQNDSKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=988132 AAB158_RS25690 WP_192207233.1 5304086..5304448(-) (ssbB) [Peribacillus frigoritolerans strain IMGN5]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCTGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
CAATATCACGTTGGCAATCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCGGACTTCGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAGGGTGCAACGATCGGCATAACTGGCAGAATACAAACAAGG
AGATATGAAAATCAGGAGGGCAAATATGTATATGTAACTGAAGTGGTTGCCGAGAGGGTTCAATTTATTGGATCTAAACA
AAATGATAGTAAGCCCAAAGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.649

95

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

88.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

88.333

0.492
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.34

88.333

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae D39

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae R6

41.509

88.333

0.367
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367

Multiple sequence alignment