Detailed information NTG0098604

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: R8623_RS08985
• Genome accession: NZ_AP026928
• Coordinates: 1746546..1746941 (-)
• Length: 131 a.a.
• NCBI ID: WP_016398615.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700406
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1741546..1751941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8623_RS08960 (PC0401_17410)	-	1741859..1742392 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
R8623_RS08965 (PC0401_17420)	-	1742746..1742952 (-)	207	WP_000775827.1	transcriptional regulator	-
R8623_RS08970 (PC0401_17430)	-	1743112..1744368 (+)	1257	WP_317649579.1	ISL3 family transposase	-
R8623_RS08975 (PC0401_17440)	groL	1744468..1746090 (-)	1623	WP_000031588.1	chaperonin GroEL	-
R8623_RS08980 (PC0401_17450)	groES	1746106..1746390 (-)	285	WP_000917340.1	co-chaperone GroES	-
R8623_RS08985 (PC0401_17460)	ssbB/cilA	1746546..1746941 (-)	396	WP_016398615.1	single-stranded DNA-binding protein	Machinery gene
R8623_RS08990 (PC0401_17470)	-	1747019..1747780 (-)	762	WP_016398614.1	SDR family oxidoreductase	-
R8623_RS08995 (PC0401_17480)	ytpR	1747822..1748448 (-)	627	WP_000578286.1	YtpR family tRNA-binding protein	-
R8623_RS09000 (PC0401_17490)	-	1748464..1748781 (-)	318	WP_000615776.1	thioredoxin family protein	-
R8623_RS09005 (PC0401_17500)	-	1748778..1749077 (-)	300	WP_001818001.1	DUF4651 domain-containing protein	-
R8623_RS09010	-	1749171..1749302 (+)	132	WP_001811306.1	hypothetical protein	-
R8623_RS10975	-	1749414..1749609 (-)	196	Protein_1763	cell wall-binding protein	-
R8623_RS09025 (PC0401_17510)	-	1749770..1750444 (-)	675	WP_000725750.1	LiaF transmembrane domain-containing protein	-
R8623_RS09030 (PC0401_17520)	-	1750450..1750896 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
R8623_RS09035	-	1751010..1751513 (-)	504	WP_000800942.1	phosphatase PAP2 family protein	-
R8623_RS09040 (PC0401_17530)	-	1751510..1751872 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14965.93 Da
• Isoelectric Point: 5.9409

>NTDB_id=98604 R8623_RS08985 WP_016398615.1 1746546..1746941(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700406]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWSRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=98604 R8623_RS08985 WP_016398615.1 1746546..1746941(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700406]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTAT
GGAGCAGGCTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae Rx1	97.71	100	0.977
ssbB/cilA	Streptococcus pneumoniae D39	97.71	100	0.977
ssbB/cilA	Streptococcus pneumoniae R6	97.71	100	0.977
ssbB/cilA	Streptococcus mitis SK321	97.71	100	0.977
ssbB/cilA	Streptococcus mitis NCTC 12261	96.183	100	0.962
ssbA	Streptococcus mutans UA159	74.046	100	0.74
ssbB	Streptococcus sobrinus strain NIDR 6715-7	69.466	100	0.695
ssbB	Lactococcus lactis subsp. cremoris KW2	58.929	85.496	0.504
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405