Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | NST70_RS16210 | Genome accession | NZ_CP151971 |
| Coordinates | 3381671..3382030 (+) | Length | 119 a.a. |
| NCBI ID | WP_026683911.1 | Uniprot ID | - |
| Organism | Weizmannia sp. FSL K6-0777 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3376671..3387030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST70_RS16200 (NST70_16200) | - | 3378122..3380923 (+) | 2802 | WP_342475455.1 | DEAD/DEAH box helicase | - |
| NST70_RS16205 (NST70_16205) | - | 3380942..3381364 (-) | 423 | WP_014096780.1 | YwpF-like family protein | - |
| NST70_RS16210 (NST70_16210) | ssbB | 3381671..3382030 (+) | 360 | WP_026683911.1 | single-stranded DNA-binding protein | Machinery gene |
| NST70_RS16215 (NST70_16215) | - | 3382037..3382201 (+) | 165 | WP_013860712.1 | hypothetical protein | - |
| NST70_RS16220 (NST70_16220) | fabZ | 3382389..3382814 (-) | 426 | WP_342475456.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| NST70_RS16225 (NST70_16225) | - | 3382942..3383772 (-) | 831 | WP_014096777.1 | flagellar hook-basal body protein | - |
| NST70_RS16230 (NST70_16230) | - | 3383800..3384588 (-) | 789 | WP_342476237.1 | flagellar hook-basal body protein | - |
| NST70_RS16235 (NST70_16235) | - | 3384627..3385628 (-) | 1002 | WP_014096775.1 | rod shape-determining protein | - |
| NST70_RS16240 (NST70_16240) | spoIIID | 3386018..3386284 (-) | 267 | WP_014096774.1 | sporulation transcriptional regulator SpoIIID | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13441.33 Da Isoelectric Point: 9.9022
>NTDB_id=982721 NST70_RS16210 WP_026683911.1 3381671..3382030(+) (ssbB) [Weizmannia sp. FSL K6-0777]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKDGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKDGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
Nucleotide
Download Length: 360 bp
>NTDB_id=982721 NST70_RS16210 WP_026683911.1 3381671..3382030(+) (ssbB) [Weizmannia sp. FSL K6-0777]
TTGATTAACCAGGTCACATTAGTCGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGCCGGATTCAGACCCGC
CATTATGATAATAAAGACGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
AGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
TTGATTAACCAGGTCACATTAGTCGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGCCGGATTCAGACCCGC
CATTATGATAATAAAGACGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
AGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.909 |
92.437 |
0.563 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
89.076 |
0.471 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.552 |
97.479 |
0.454 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.241 |
97.479 |
0.412 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.667 |
90.756 |
0.378 |
| ssbA | Streptococcus mutans UA159 |
41.667 |
90.756 |
0.378 |