Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSS81_RS10920 Genome accession   NZ_CP151943
Coordinates   2223714..2224109 (-) Length   131 a.a.
NCBI ID   WP_342433523.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2213282..2229313 2223714..2224109 within 0


Gene organization within MGE regions


Location: 2213282..2229313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS10865 (NSS81_10865) - 2213282..2216248 (+) 2967 WP_342433512.1 DEAD/DEAH box helicase -
  NSS81_RS10870 (NSS81_10870) - 2216758..2217270 (+) 513 WP_342433513.1 GNAT family N-acetyltransferase -
  NSS81_RS10875 (NSS81_10875) - 2217274..2217708 (+) 435 WP_342433514.1 DUF4275 family protein -
  NSS81_RS10880 (NSS81_10880) - 2217777..2218163 (-) 387 WP_342433515.1 hypothetical protein -
  NSS81_RS10885 (NSS81_10885) - 2218182..2219153 (-) 972 WP_342433516.1 glycerophosphodiester phosphodiesterase family protein -
  NSS81_RS10890 (NSS81_10890) - 2219326..2219973 (-) 648 WP_342433517.1 DUF3885 domain-containing protein -
  NSS81_RS10895 (NSS81_10895) - 2220194..2220349 (-) 156 WP_342433518.1 hypothetical protein -
  NSS81_RS10900 (NSS81_10900) - 2220641..2220856 (+) 216 WP_342433519.1 DUF3951 domain-containing protein -
  NSS81_RS10905 (NSS81_10905) - 2220965..2221174 (+) 210 WP_342433520.1 hypothetical protein -
  NSS81_RS10910 (NSS81_10910) - 2221434..2222504 (-) 1071 WP_342433521.1 3D domain-containing protein -
  NSS81_RS10915 (NSS81_10915) - 2223454..2223717 (-) 264 WP_342433522.1 hypothetical protein -
  NSS81_RS10920 (NSS81_10920) ssbB 2223714..2224109 (-) 396 WP_342433523.1 single-stranded DNA-binding protein Machinery gene
  NSS81_RS10925 (NSS81_10925) - 2224354..2224791 (+) 438 WP_342433524.1 YwpF-like family protein -
  NSS81_RS10930 (NSS81_10930) - 2225127..2225456 (-) 330 WP_342433525.1 hypothetical protein -
  NSS81_RS10935 (NSS81_10935) fabZ 2225578..2226012 (-) 435 WP_342433526.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSS81_RS10940 (NSS81_10940) - 2226099..2226368 (-) 270 WP_342433527.1 DNA-directed RNA polymerase subunit beta -
  NSS81_RS10945 (NSS81_10945) - 2226695..2227696 (-) 1002 WP_342433528.1 rod shape-determining protein -
  NSS81_RS10950 (NSS81_10950) - 2227731..2228042 (-) 312 WP_342433529.1 hypothetical protein -
  NSS81_RS10955 (NSS81_10955) spoIIID 2228167..2228439 (-) 273 WP_342433530.1 sporulation transcriptional regulator SpoIIID -
  NSS81_RS10960 (NSS81_10960) - 2228987..2229313 (+) 327 WP_342433531.1 MGMT family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14916.01 Da        Isoelectric Point: 9.5397

>NTDB_id=981530 NSS81_RS10920 WP_342433523.1 2223714..2224109(-) (ssbB) [Neobacillus sp. FSL H8-0543]
MINQVTLVGRLTKDPELKTTPDGTPVTQVTLAVSRHFRNHNGEIDADFVSCTLWKKAAENTVHYCRKGSVVGITGRLQTR
NYENREGKKVYVTEVVTESIRFLSPKPQERPTVKKEEVPFTPTMNREEVPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=981530 NSS81_RS10920 WP_342433523.1 2223714..2224109(-) (ssbB) [Neobacillus sp. FSL H8-0543]
ATGATCAATCAAGTTACTCTTGTTGGAAGATTAACGAAGGATCCCGAATTGAAGACAACGCCAGACGGGACCCCTGTGAC
ACAGGTGACCTTGGCCGTTAGCCGTCACTTTAGAAACCATAATGGAGAAATTGATGCCGATTTTGTATCATGCACGCTTT
GGAAAAAAGCGGCGGAAAACACGGTACATTATTGCCGAAAGGGGTCGGTTGTCGGGATTACCGGCAGGCTGCAAACACGC
AATTATGAAAATCGCGAGGGGAAGAAGGTTTATGTGACCGAGGTTGTGACGGAATCGATCCGCTTCCTAAGTCCAAAACC
TCAAGAGAGGCCGACCGTCAAAAAGGAAGAAGTGCCATTTACGCCGACGATGAATAGGGAGGAAGTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

80.916

0.466
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

80.916

0.42
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.909

100

0.412
  ssbA Streptococcus mutans UA159

40.152

100

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

37.594

100

0.382
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.594

100

0.382
  ssbB/cilA Streptococcus pneumoniae Rx1

36.842

100

0.374
  ssbB/cilA Streptococcus pneumoniae D39

36.842

100

0.374
  ssbB/cilA Streptococcus pneumoniae R6

36.842

100

0.374
  ssbB/cilA Streptococcus mitis SK321

36.842

100

0.374

Multiple sequence alignment