Detailed information NTG0097908

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R8613_RS10225
• Genome accession: NZ_AP026919
• Coordinates: 1945801..1946205 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588030.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700012
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1940801..1951205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8613_RS10185 (PC0012_19650)	rnpA	1941223..1941594 (-)	372	WP_000739246.1	ribonuclease P protein component	-
R8613_RS10190	-	1941611..1941742 (-)	132	WP_000768904.1	hypothetical protein	-
R8613_RS10195 (PC0012_19660)	-	1941743..1942933 (-)	1191	WP_000167769.1	acetate kinase	-
R8613_RS10200 (PC0012_19670)	comYH	1942984..1943937 (-)	954	WP_050072683.1	class I SAM-dependent methyltransferase	Machinery gene
R8613_RS10205 (PC0012_19680)	-	1943998..1944585 (-)	588	WP_000679772.1	class I SAM-dependent methyltransferase	-
R8613_RS10210 (PC0012_19690)	comGG/cglG	1944688..1945134 (-)	447	WP_001811371.1	competence type IV pilus minor pilin ComGG	Machinery gene
R8613_RS10215	comGF/cglF	1945112..1945573 (-)	462	WP_000250539.1	competence type IV pilus minor pilin ComGF	Machinery gene
R8613_RS10220 (PC0012_19710)	comGE/cglE	1945536..1945838 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
R8613_RS10225 (PC0012_19720)	comGD/cglD	1945801..1946205 (-)	405	WP_000588030.1	competence type IV pilus minor pilin ComGD	Machinery gene
R8613_RS10230 (PC0012_19730)	comGC/cglC	1946198..1946524 (-)	327	WP_219565693.1	competence type IV pilus major pilin ComGC	Machinery gene
R8613_RS10235 (PC0012_19740)	comGB/cglB	1946526..1947542 (-)	1017	WP_078132972.1	competence type IV pilus assembly protein ComGB	Machinery gene
R8613_RS10240 (PC0012_19750)	comGA/cglA/cilD	1947490..1948431 (-)	942	WP_001864563.1	competence type IV pilus ATPase ComGA	Machinery gene
R8613_RS10245 (PC0012_19760)	-	1948507..1948872 (-)	366	WP_000286415.1	DUF1033 family protein	-
R8613_RS10250 (PC0012_19770)	-	1949023..1950081 (-)	1059	WP_044812807.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14668.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=97908 R8613_RS10225 WP_000588030.1 1945801..1946205(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700012]
MIKAFTMLESLLVLGLVSILALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=97908 R8613_RS10225 WP_000588030.1 1945801..1946205(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700012]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGTGAGTATCCTTGCCTTGGGCTTATCCAGCTC
TGTCCAGTCCACTTTTGCAGCAGTAGAGGAGCAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	48.438	95.522	0.463
comYD	Streptococcus mutans UA159	48.438	95.522	0.463