Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | R8563_RS09055 | Genome accession | NZ_AP026917 |
| Coordinates | 1746422..1746799 (-) | Length | 125 a.a. |
| NCBI ID | WP_000580361.1 | Uniprot ID | A0A0T8VDZ4 |
| Organism | Streptococcus pneumoniae strain PZ900700007 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1747003..1748349 | 1746422..1746799 | flank | 204 |
Gene organization within MGE regions
Location: 1746422..1748349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8563_RS09055 (PC0007_17580) | ssbB/cilA | 1746422..1746799 (-) | 378 | WP_000580361.1 | single-stranded DNA-binding protein | Machinery gene |
| R8563_RS09060 (PC0007_17590) | - | 1747003..1748349 (-) | 1347 | WP_050206149.1 | IS1380-like element ISSpn5 family transposase | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 14176.95 Da Isoelectric Point: 5.2813
>NTDB_id=97737 R8563_RS09055 WP_000580361.1 1746422..1746799(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700007]
MIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKNG
QMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKNG
QMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 378 bp
>NTDB_id=97737 R8563_RS09055 WP_000580361.1 1746422..1746799(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700007]
TTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGCGCGAGCAACTATCGCTGT
CAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTATGGGGCAGGCTAGCAGAAA
CTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGTCGCTTTGAGAAAAATGGT
CAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCAACGTGCCATGCGTGAAAA
TAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
TTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGCGCGAGCAACTATCGCTGT
CAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTATGGGGCAGGCTAGCAGAAA
CTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGTCGCTTTGAGAAAAATGGT
CAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCAACGTGCCATGCGTGAAAA
TAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
99.2 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
98.4 |
100 |
0.984 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
98.4 |
100 |
0.984 |
| ssbA | Streptococcus mutans UA159 |
73.6 |
100 |
0.736 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
68.8 |
100 |
0.688 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.185 |
86.4 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51 |
80 |
0.408 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.729 |
85.6 |
0.4 |