Detailed information NTG0097675

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R8522_RS10445
• Genome accession: NZ_AP026916
• Coordinates: 2020699..2021103 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588007.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700006
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2015699..2026103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8522_RS10405 (PC0006_20790)	rnpA	2016120..2016491 (-)	372	WP_000739246.1	ribonuclease P protein component	-
R8522_RS10410	-	2016508..2016639 (-)	132	WP_000768904.1	hypothetical protein	-
R8522_RS10415 (PC0006_20800)	-	2016640..2017830 (-)	1191	WP_000167759.1	acetate kinase	-
R8522_RS10420 (PC0006_20810)	comYH	2017881..2018834 (-)	954	WP_000345123.1	class I SAM-dependent methyltransferase	Machinery gene
R8522_RS10425 (PC0006_20820)	-	2018895..2019482 (-)	588	WP_000679774.1	class I SAM-dependent methyltransferase	-
R8522_RS10430 (PC0006_20830)	comGG/cglG	2019619..2020032 (-)	414	WP_000265630.1	competence type IV pilus minor pilin ComGG	Machinery gene
R8522_RS10435	comGF/cglF	2020010..2020471 (-)	462	WP_000250548.1	competence type IV pilus minor pilin ComGF	Machinery gene
R8522_RS10440 (PC0006_20850)	comGE/cglE	2020434..2020736 (-)	303	WP_000413380.1	competence type IV pilus minor pilin ComGE	Machinery gene
R8522_RS10445 (PC0006_20860)	comGD/cglD	2020699..2021103 (-)	405	WP_000588007.1	competence type IV pilus minor pilin ComGD	Machinery gene
R8522_RS10450 (PC0006_20870)	comGC/cglC	2021096..2021422 (-)	327	WP_000738624.1	competence type IV pilus major pilin ComGC	Machinery gene
R8522_RS10455 (PC0006_20880)	comGB/cglB	2021424..2022440 (-)	1017	WP_078140087.1	competence type IV pilus assembly protein ComGB	Machinery gene
R8522_RS10460 (PC0006_20890)	comGA/cglA/cilD	2022388..2023329 (-)	942	WP_000249549.1	competence type IV pilus ATPase ComGA	Machinery gene
R8522_RS10465 (PC0006_20900)	-	2023405..2023770 (-)	366	WP_000286415.1	DUF1033 family protein	-
R8522_RS10470 (PC0006_20910)	-	2023921..2024979 (-)	1059	WP_000649471.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14668.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=97675 R8522_RS10445 WP_000588007.1 2020699..2021103(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700006]
MIKAFTMLESLLVLGFVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLPV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=97675 R8522_RS10445 WP_000588007.1 2020699..2021103(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700006]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTTTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCGGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGCCCCATCAGGTCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	98.507	100	0.985
comGD/cglD	Streptococcus pneumoniae Rx1	96.269	100	0.963
comGD/cglD	Streptococcus pneumoniae D39	96.269	100	0.963
comGD/cglD	Streptococcus pneumoniae R6	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.241	99.254	0.955
comGD/cglD	Streptococcus mitis SK321	95.522	100	0.955
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47