Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAC899_RS14545 Genome accession   NZ_CP151168
Coordinates   3088248..3089474 (+) Length   408 a.a.
NCBI ID   WP_004932468.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3083248..3094474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS14510 (AAC899_14510) rimP 3083508..3084032 (-) 525 WP_004932478.1 ribosome maturation factor RimP -
  AAC899_RS14530 (AAC899_14530) secG 3085109..3085438 (-) 330 WP_004932477.1 preprotein translocase subunit SecG -
  AAC899_RS14535 (AAC899_14535) tpiA 3085448..3086245 (-) 798 WP_004932474.1 triose-phosphate isomerase -
  AAC899_RS14540 (AAC899_14540) pilB 3086509..3088224 (+) 1716 WP_317657727.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAC899_RS14545 (AAC899_14545) pilC 3088248..3089474 (+) 1227 WP_004932468.1 type II secretion system F family protein Machinery gene
  AAC899_RS14550 (AAC899_14550) pilD 3089474..3090334 (+) 861 WP_048765376.1 A24 family peptidase Machinery gene
  AAC899_RS14555 (AAC899_14555) coaE 3090337..3090936 (+) 600 WP_149929795.1 dephospho-CoA kinase -
  AAC899_RS14560 (AAC899_14560) - 3090912..3091841 (-) 930 WP_288408460.1 DMT family transporter -
  AAC899_RS14565 (AAC899_14565) rlmB 3091879..3092625 (-) 747 WP_004932455.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AAC899_RS14570 (AAC899_14570) - 3092727..3093053 (-) 327 WP_004932453.1 pyrimidine/purine nucleoside phosphorylase -
  AAC899_RS14575 (AAC899_14575) - 3093138..3094442 (-) 1305 WP_119025681.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45167.56 Da        Isoelectric Point: 10.0755

>NTDB_id=975592 AAC899_RS14545 WP_004932468.1 3088248..3089474(+) (pilC) [Acinetobacter soli strain HY24]
MAAKKVQTVPTFAYEGVDRKGIKLKGELSARNMALAKVTLRKQGITIRTIREKRRNLLEGLFKKKVKPLDITIFTRQLAT
MMKAGVPLVQAFEIVAEGLDNPAMREVVLGLKTDVEGGNTFAGALRKYPQHFDNLFCSLIESGEQSGSLETMLERVAVYK
EKSEVLKQKIKKAMKYPAMVIVVAIVVTIILMVKVVPVFKDLFTSFGADLPAFTQMVVNMSNWMQSYWILLIFIIGAVIA
GFLEARKRSKTFRDRLDQLVLRLPIVGDLVYKAIIARYSRTLATTFAAGVPLIDALASTAGATNNSIYERAVLKIRDDVS
TGQQLHFAMRVSNRFPTMAIQMVAIGEESGALDEMLDKVANYYESEVDHAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=975592 AAC899_RS14545 WP_004932468.1 3088248..3089474(+) (pilC) [Acinetobacter soli strain HY24]
ATGGCAGCAAAAAAAGTACAAACAGTGCCCACTTTCGCGTATGAAGGTGTTGATCGCAAGGGGATCAAACTTAAAGGGGA
GCTTTCTGCCCGTAATATGGCATTGGCCAAAGTCACCTTGCGTAAACAAGGCATTACCATTCGAACCATTCGTGAAAAGC
GCCGCAACCTGCTTGAAGGACTATTTAAGAAAAAAGTTAAACCGCTCGATATCACGATTTTTACTCGCCAGTTGGCAACC
ATGATGAAAGCAGGTGTGCCGCTGGTGCAGGCCTTTGAAATTGTCGCTGAGGGCTTGGATAATCCTGCGATGCGCGAGGT
GGTACTCGGACTCAAAACAGATGTCGAAGGAGGCAATACTTTTGCTGGTGCGCTGCGTAAATATCCGCAGCACTTCGATA
ATCTGTTTTGCTCTCTAATTGAGTCGGGTGAACAATCGGGTTCGCTTGAAACCATGCTAGAGCGAGTTGCGGTATATAAA
GAAAAAAGTGAAGTATTAAAGCAGAAAATCAAAAAAGCCATGAAGTATCCGGCTATGGTGATTGTGGTCGCGATCGTGGT
GACCATTATTTTGATGGTGAAAGTGGTTCCGGTATTTAAAGATTTATTTACCTCATTTGGCGCAGACTTGCCAGCCTTTA
CCCAGATGGTGGTGAACATGTCCAACTGGATGCAGTCTTACTGGATATTGCTCATTTTCATTATCGGTGCGGTGATTGCT
GGCTTTTTAGAGGCACGTAAACGCAGCAAAACTTTTCGTGATCGTCTAGATCAACTCGTGCTTCGTCTGCCGATTGTGGG
TGATCTGGTCTATAAAGCCATTATTGCCCGTTATAGTCGTACCCTTGCCACCACTTTCGCAGCGGGTGTTCCACTGATTG
ATGCGCTGGCATCTACCGCAGGTGCAACCAATAACAGTATTTATGAACGTGCTGTGCTTAAAATTCGTGACGATGTATCT
ACAGGCCAGCAGCTTCATTTTGCCATGCGAGTGTCGAATCGTTTCCCCACGATGGCCATTCAAATGGTGGCCATTGGTGA
AGAATCCGGGGCACTAGATGAAATGCTGGATAAAGTTGCGAATTATTATGAAAGTGAAGTCGATCACGCGGTAGACGGAC
TTACATCGATGATGGAACCCTTGATTATGGCAATTCTGGGCATTTTAGTGGGTGGTCTGGTGATTGCGATGTATCTTCCG
ATTTTCCAAATGGGTTCAGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

91.912

100

0.919
  pilC Acinetobacter baumannii D1279779

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.658

100

0.598
  pilC Legionella pneumophila strain ERS1305867

53.015

97.549

0.517
  pilG Neisseria gonorrhoeae MS11

46.115

97.794

0.451
  pilG Neisseria meningitidis 44/76-A

45.865

97.794

0.449
  pilC Vibrio cholerae strain A1552

42.998

99.755

0.429
  pilC Vibrio campbellii strain DS40M4

43.25

98.039

0.424
  pilC Thermus thermophilus HB27

36.973

98.775

0.365

Multiple sequence alignment