Detailed information NTG0975593

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAC899_RS14550
• Genome accession: NZ_CP151168
• Coordinates: 3089474..3090334 (+)
• Length: 286 a.a.
• NCBI ID: WP_048765376.1
• Uniprot ID: A0A0M1I3I2
• Organism: Acinetobacter soli strain HY24
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3084474..3095334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAC899_RS14530 (AAC899_14530)	secG	3085109..3085438 (-)	330	WP_004932477.1	preprotein translocase subunit SecG	-
AAC899_RS14535 (AAC899_14535)	tpiA	3085448..3086245 (-)	798	WP_004932474.1	triose-phosphate isomerase	-
AAC899_RS14540 (AAC899_14540)	pilB	3086509..3088224 (+)	1716	WP_317657727.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAC899_RS14545 (AAC899_14545)	pilC	3088248..3089474 (+)	1227	WP_004932468.1	type II secretion system F family protein	Machinery gene
AAC899_RS14550 (AAC899_14550)	pilD	3089474..3090334 (+)	861	WP_048765376.1	A24 family peptidase	Machinery gene
AAC899_RS14555 (AAC899_14555)	coaE	3090337..3090936 (+)	600	WP_149929795.1	dephospho-CoA kinase	-
AAC899_RS14560 (AAC899_14560)	-	3090912..3091841 (-)	930	WP_288408460.1	DMT family transporter	-
AAC899_RS14565 (AAC899_14565)	rlmB	3091879..3092625 (-)	747	WP_004932455.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AAC899_RS14570 (AAC899_14570)	-	3092727..3093053 (-)	327	WP_004932453.1	pyrimidine/purine nucleoside phosphorylase	-
AAC899_RS14575 (AAC899_14575)	-	3093138..3094442 (-)	1305	WP_119025681.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32008.35 Da
• Isoelectric Point: 7.9064

>NTDB_id=975593 AAC899_RS14550 WP_048765376.1 3089474..3090334(+) (pilD) [Acinetobacter soli strain HY24]
MSDIFSYFITNSTALYLVIGILSLCIGSFLNVVIYRTPKMMEQEWTQECQLLLHPEQVVIETEKLSLSSPASSCPHCRAP
IRWYHNIPVLSWLALRGKCHACDHPITIRYPAIEVLTLLTSLTVLMVLGPTLKMLFGLVLTWMLIALTFIDFDTQLLPDR
YTLTLAGLGLAINSAHVYVSPNEAIWGYVIGFLCLWVVYYLFKLLTKKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSF
VGAIIGVVLLRIRKQNQPFAFGPFIAIAGWIAFLWGDAIMRVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=975593 AAC899_RS14550 WP_048765376.1 3089474..3090334(+) (pilD) [Acinetobacter soli strain HY24]
ATGTCTGATATCTTCTCATATTTTATTACCAATTCGACTGCGCTTTATCTCGTGATTGGTATCTTAAGCCTGTGTATTGG
CAGCTTTTTAAATGTGGTGATCTACCGCACACCCAAAATGATGGAGCAGGAATGGACACAAGAATGCCAGTTGTTGCTGC
ATCCAGAACAGGTCGTAATTGAAACCGAAAAGCTCAGTCTAAGTTCACCTGCATCTTCATGTCCGCATTGTCGTGCGCCA
ATTCGCTGGTATCACAATATTCCAGTGCTAAGCTGGCTGGCTCTACGCGGGAAATGTCATGCGTGTGACCACCCGATTAC
AATCCGCTACCCCGCCATTGAAGTGCTTACGCTGCTGACCTCACTGACTGTGCTGATGGTTTTGGGGCCAACGCTTAAAA
TGTTGTTTGGGCTAGTGCTCACTTGGATGTTAATTGCGCTGACCTTTATCGACTTTGATACTCAGCTTTTACCAGATCGC
TATACCCTCACCCTTGCAGGATTAGGCTTGGCCATCAATAGCGCGCATGTGTATGTTTCTCCCAATGAGGCCATCTGGGG
CTATGTCATCGGCTTTTTGTGTTTATGGGTGGTGTATTACCTGTTTAAACTGCTCACCAAAAAAGAAGGCATGGGATACG
GTGATTTCAAACTACTGGCAGCGCTGGGGGCTTGGATGGGGCCGCTAATGCTGCCGCTGATTGTGCTGTTGTCGTCGTTT
GTGGGGGCGATTATTGGTGTTGTACTTTTGCGTATTCGCAAGCAAAATCAGCCTTTTGCATTTGGTCCCTTTATTGCCAT
TGCGGGCTGGATTGCCTTTTTATGGGGAGATGCAATTATGCGGGTATATTTAGGAGGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A0M1I3I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	75.524	100	0.755
pilD	Acinetobacter nosocomialis M2	75.524	100	0.755
pilD	Vibrio cholerae strain A1552	52.985	93.706	0.497
pilD	Vibrio campbellii strain DS40M4	52.434	93.357	0.49
pilD	Neisseria gonorrhoeae MS11	46.565	91.608	0.427