Detailed information NTG0097507

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: R8474_RS08900
• Genome accession: NZ_AP026914
• Coordinates: 1761911..1762306 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282443.1
• Uniprot ID: A0A0E8PDH7
• Organism: Streptococcus pneumoniae strain PZ900700003
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1756911..1767306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8474_RS08875 (PC0003_17450)	-	1757171..1757704 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
R8474_RS10720 (PC0003_17460)	-	1758061..1758267 (-)	207	WP_000775827.1	transcriptional regulator	-
R8474_RS08885	-	1758428..1759734 (+)	1307	Protein_1741	transposase	-
R8474_RS08890 (PC0003_17490)	groL	1759833..1761455 (-)	1623	WP_000031588.1	chaperonin GroEL	-
R8474_RS08895 (PC0003_17500)	groES	1761471..1761755 (-)	285	WP_000917340.1	co-chaperone GroES	-
R8474_RS08900 (PC0003_17510)	ssbB/cilA	1761911..1762306 (-)	396	WP_000282443.1	single-stranded DNA-binding protein	Machinery gene
R8474_RS08905 (PC0003_17520)	-	1762384..1763145 (-)	762	WP_001107752.1	SDR family oxidoreductase	-
R8474_RS08910 (PC0003_17530)	ytpR	1763187..1763813 (-)	627	WP_000578286.1	YtpR family tRNA-binding protein	-
R8474_RS08915 (PC0003_17540)	-	1763829..1764146 (-)	318	WP_000615772.1	thioredoxin family protein	-
R8474_RS08920 (PC0003_17550)	-	1764143..1764442 (-)	300	WP_001013974.1	DUF4651 domain-containing protein	-
R8474_RS08925 (PC0003_17560)	-	1764640..1764837 (-)	198	Protein_1749	N-acetylmuramoyl-L-alanine amidase family protein	-
R8474_RS08930 (PC0003_17570)	-	1765079..1765753 (-)	675	WP_000725741.1	LiaF transmembrane domain-containing protein	-
R8474_RS08935 (PC0003_17580)	-	1765759..1766205 (-)	447	WP_000776590.1	LytTR family DNA-binding domain-containing protein	-
R8474_RS08940	-	1766319..1766822 (-)	504	WP_000800942.1	phosphatase PAP2 family protein	-
R8474_RS08945 (PC0003_17590)	-	1766819..1767181 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14935.91 Da
• Isoelectric Point: 5.9409

>NTDB_id=97507 R8474_RS08900 WP_000282443.1 1761911..1762306(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700003]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=97507 R8474_RS08900 WP_000282443.1 1761911..1762306(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700003]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTAT
GGGGCAGGCTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A0E8PDH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae Rx1	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae D39	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae R6	98.473	100	0.985
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	96.947	100	0.969
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405