Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AABM54_RS22070 Genome accession   NZ_CP150918
Coordinates   4926178..4927395 (+) Length   405 a.a.
NCBI ID   WP_347902073.1    Uniprot ID   -
Organism   Pseudomonas purpurea strain DGS26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4921178..4932395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM54_RS22050 - 4922692..4922988 (+) 297 WP_347902068.1 DUF2845 domain-containing protein -
  AABM54_RS22055 - 4923162..4923518 (-) 357 WP_347902070.1 BON domain-containing protein -
  AABM54_RS22060 - 4923832..4924248 (-) 417 WP_347902071.1 pilin -
  AABM54_RS22065 pilB 4924474..4926174 (+) 1701 WP_347902072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AABM54_RS22070 pilC 4926178..4927395 (+) 1218 WP_347902073.1 type II secretion system F family protein Machinery gene
  AABM54_RS22075 pilD 4927398..4928270 (+) 873 WP_347902074.1 A24 family peptidase Machinery gene
  AABM54_RS22080 coaE 4928267..4928890 (+) 624 WP_347902075.1 dephospho-CoA kinase -
  AABM54_RS22085 yacG 4928887..4929087 (+) 201 WP_347902076.1 DNA gyrase inhibitor YacG -
  AABM54_RS22090 - 4929097..4929312 (-) 216 WP_347902077.1 hypothetical protein -
  AABM54_RS22095 - 4929402..4930091 (-) 690 WP_347902078.1 energy-coupling factor ABC transporter permease -
  AABM54_RS22100 - 4930359..4930985 (+) 627 WP_347902079.1 DUF1780 domain-containing protein -
  AABM54_RS22105 - 4931033..4931150 (+) 118 Protein_4340 MOSC domain-containing protein -
  AABM54_RS22110 - 4931204..4931377 (+) 174 WP_347902080.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44230.10 Da        Isoelectric Point: 10.0627

>NTDB_id=973784 AABM54_RS22070 WP_347902073.1 4926178..4927395(+) (pilC) [Pseudomonas purpurea strain DGS26]
MAVKAVKVSVYAWEGIDKKGTKMTGELSGHNPALIKAQLRKQGINPGKVRKKSASLLRAGQRIKAHDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAVVVTGILLIKVVPQFQSVFAGFGAQLPVFTLMVIALSEFLQTWWWLVLLVLIATGFGVR
QAFRRSQRFRDALDTYLLKMPLVGALMYKSSVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFKNAVNRIRQDVSTGM
QLNFSMRATGMFPSMAVQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=973784 AABM54_RS22070 WP_347902073.1 4926178..4927395(+) (pilC) [Pseudomonas purpurea strain DGS26]
ATGGCGGTCAAAGCCGTAAAAGTCAGCGTTTACGCTTGGGAAGGCATCGATAAAAAAGGCACGAAAATGACCGGCGAACT
GAGCGGTCATAACCCGGCGCTGATCAAGGCACAGTTGCGCAAGCAAGGGATCAACCCCGGTAAGGTGCGAAAGAAATCCG
CCTCCCTGCTGCGGGCAGGTCAACGCATCAAAGCCCACGACATTGCCCTGTTCACCCGGCAAATGGCGACCATGATGAAG
GCCGGAGTGCCATTGCTGCAGTCGTTCGACATCATCGGCGAAGGTTTCGATAACCCGAACATGCGCAAACTGGTGGACGA
GGTAAAACAGGAAGTCGCCGCCGGTAACAGCTTCGCCGCCGCGCTGCGCAAAAAACCTCAGTACTTCGATGAGCTCTACT
GCAACCTCGTAGACGCAGGTGAGCAGGCCGGGGCCCTCGACACGTTGCTGGAGCGTGTCGCCACCTACAAGGAAAAAAGC
GAAAGCCTCAAGGCCAAAATCAAGAAAGCCATGACCTATCCACTGGCCGTGGTTTTCGTCGCCGTTGTTGTTACCGGCAT
CCTCCTGATCAAGGTCGTACCGCAATTCCAATCGGTGTTTGCCGGGTTCGGTGCCCAGTTGCCGGTCTTCACCCTGATGG
TCATCGCCCTTTCCGAGTTCTTGCAGACGTGGTGGTGGCTGGTGCTGCTGGTGTTGATCGCCACAGGCTTCGGCGTGCGG
CAAGCGTTCAGGCGCTCGCAACGCTTTCGCGACGCACTCGACACCTATCTGCTGAAAATGCCACTGGTGGGCGCGCTGAT
GTACAAGTCATCCGTGGCCCGTTATGCACGCACCCTCTCGACCACGTTCGCTGCCGGCGTGCCGCTGGTCGAAGCCCTCG
ACTCGGTGGCGGGGGCCACGGGCAACGTCGTGTTCAAGAACGCGGTGAACCGGATCAGGCAGGATGTTTCCACGGGCATG
CAGTTGAACTTCTCCATGCGTGCCACGGGCATGTTCCCCAGCATGGCGGTTCAAATGACCGCCATCGGTGAAGAATCCGG
TGCACTGGATGACATGCTCGACAAGGTTGCGAGCTTCTATGAAGCGGAAGTCGATAACATGGTCGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGGTGCTAGGCGTTATCGTCGGCGGTCTGGTGGTTGCCATGTACCTGCCTATTTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.309

100

0.753
  pilC Acinetobacter baylyi ADP1

57.843

100

0.583
  pilC Acinetobacter baumannii D1279779

57.353

100

0.578
  pilC Legionella pneumophila strain ERS1305867

52.273

97.778

0.511
  pilG Neisseria gonorrhoeae MS11

43.035

99.259

0.427
  pilG Neisseria meningitidis 44/76-A

42.716

100

0.427
  pilC Vibrio cholerae strain A1552

42.893

99.012

0.425
  pilC Vibrio campbellii strain DS40M4

40.796

99.259

0.405
  pilC Thermus thermophilus HB27

38.25

98.765

0.378

Multiple sequence alignment