Detailed information NTG0973785

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABM54_RS22075
• Genome accession: NZ_CP150918
• Coordinates: 4927398..4928270 (+)
• Length: 290 a.a.
• NCBI ID: WP_347902074.1
• Uniprot ID: -
• Organism: Pseudomonas purpurea strain DGS26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4922398..4933270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABM54_RS22050	-	4922692..4922988 (+)	297	WP_347902068.1	DUF2845 domain-containing protein	-
AABM54_RS22055	-	4923162..4923518 (-)	357	WP_347902070.1	BON domain-containing protein	-
AABM54_RS22060	-	4923832..4924248 (-)	417	WP_347902071.1	pilin	-
AABM54_RS22065	pilB	4924474..4926174 (+)	1701	WP_347902072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AABM54_RS22070	pilC	4926178..4927395 (+)	1218	WP_347902073.1	type II secretion system F family protein	Machinery gene
AABM54_RS22075	pilD	4927398..4928270 (+)	873	WP_347902074.1	A24 family peptidase	Machinery gene
AABM54_RS22080	coaE	4928267..4928890 (+)	624	WP_347902075.1	dephospho-CoA kinase	-
AABM54_RS22085	yacG	4928887..4929087 (+)	201	WP_347902076.1	DNA gyrase inhibitor YacG	-
AABM54_RS22090	-	4929097..4929312 (-)	216	WP_347902077.1	hypothetical protein	-
AABM54_RS22095	-	4929402..4930091 (-)	690	WP_347902078.1	energy-coupling factor ABC transporter permease	-
AABM54_RS22100	-	4930359..4930985 (+)	627	WP_347902079.1	DUF1780 domain-containing protein	-
AABM54_RS22105	-	4931033..4931150 (+)	118	Protein_4340	MOSC domain-containing protein	-
AABM54_RS22110	-	4931204..4931377 (+)	174	WP_347902080.1	DUF3094 family protein	-
AABM54_RS22115	-	4931438..4932736 (+)	1299	WP_347902081.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31968.12 Da
• Isoelectric Point: 7.6858

>NTDB_id=973785 AABM54_RS22075 WP_347902074.1 4927398..4928270(+) (pilD) [Pseudomonas purpurea strain DGS26]
MPLSEFLASVPLAFVLTALGLGLLIGSFLNVVVWRLPKMLEREWRLQAHEVLGLPSESPGPVYNLMLPHSECPHCGHRIR
AWENIPLLSYVALRGRCSNCKTPISCRYPLTELACGVLSAFIAWHFGFGWQAGWVLLLSWGLLAMSLIDAEHQLLPDVLV
MPLLWLGLIVNSFSLFVPLADAMWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLVLLRLRDAKTSTPIPFGPYLAIAGWIALLWGGQITDLYWQSVGFK

Nucleotide

• Length: 873 bp

>NTDB_id=973785 AABM54_RS22075 WP_347902074.1 4927398..4928270(+) (pilD) [Pseudomonas purpurea strain DGS26]
ATGCCTTTGAGTGAGTTTCTGGCCAGCGTTCCACTGGCGTTTGTGTTGACGGCGCTGGGGCTGGGGCTGCTGATCGGCAG
CTTCCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAACGCGAATGGCGGTTGCAGGCCCACGAAGTACTCGGTT
TGCCGAGCGAATCGCCAGGGCCGGTCTACAACCTGATGCTGCCGCACTCCGAGTGCCCCCACTGCGGTCACCGCATACGC
GCCTGGGAAAATATTCCACTGCTCAGCTATGTGGCACTGCGGGGGCGCTGTTCCAACTGCAAGACCCCCATCAGTTGCCG
CTACCCGCTGACCGAACTGGCCTGTGGCGTGCTCTCGGCGTTTATCGCCTGGCACTTCGGATTCGGCTGGCAGGCAGGCT
GGGTGCTGCTCCTGAGCTGGGGCTTGCTGGCGATGAGCCTGATCGATGCCGAGCATCAATTGCTCCCCGATGTGCTGGTC
ATGCCGCTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCAGCCTGTTCGTCCCCTTGGCTGATGCCATGTGGGGCGCCGT
CGCTGGCTACCTGGCGCTGTGGTCGGTGTTTTGGCTTTTCAAGCTACTCACCGGCAAGGACGGCATCGGCCACGGTGATT
TCAAGCTGCTGGCAATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCACTGACCATTCTGCTGTCTTCACTGGTGGGC
GCCGTGCTGGGGCTGGTTTTACTGCGTCTGCGCGATGCAAAAACCTCGACGCCCATCCCCTTTGGTCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACCTCTATTGGCAGTCTGTCGGTTTTAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	97.931	0.514
pilD	Vibrio campbellii strain DS40M4	49.825	98.276	0.49
pilD	Neisseria gonorrhoeae MS11	48.754	96.897	0.472
pilD	Acinetobacter baumannii D1279779	45.423	97.931	0.445
pilD	Acinetobacter nosocomialis M2	45.423	97.931	0.445