Detailed information NTG0097264

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R8949_RS13535
• Genome accession: NZ_AP026825
• Coordinates: 2747943..2748380 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain NIID-072000-002
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2742943..2753380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8949_RS13510 (N072000002_26100)	rplI	2743702..2744145 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R8949_RS13515 (N072000002_26110)	-	2744142..2746136 (-)	1995	WP_129030727.1	DHH family phosphoesterase	-
R8949_RS13520 (N072000002_26120)	-	2746149..2747138 (-)	990	WP_317719957.1	YybS family protein	-
R8949_RS13525 (N072000002_26130)	-	2747152..2747469 (-)	318	WP_011098433.1	MazG-like family protein	-
R8949_RS13530 (N072000002_26140)	rpsR	2747656..2747922 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R8949_RS13535 (N072000002_26150)	ssb	2747943..2748380 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R8949_RS13540 (N072000002_26160)	rpsF	2748396..2748680 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R8949_RS13545 (N072000002_26170)	-	2748778..2748978 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R8949_RS13550 (N072000002_26180)	-	2748971..2749855 (-)	885	WP_129030729.1	mechanosensitive ion channel family protein	-
R8949_RS13555 (N072000002_26190)	ytvI	2750105..2751160 (+)	1056	WP_035141190.1	sporulation integral membrane protein YtvI	-
R8949_RS13560 (N072000002_26200)	yyaC	2751215..2751790 (+)	576	WP_035141189.1	spore protease YyaC	-
R8949_RS13565 (N072000002_26210)	-	2751812..2752309 (-)	498	WP_035141188.1	DUF4446 family protein	-
R8949_RS13570 (N072000002_26220)	-	2752349..2753206 (-)	858	WP_035141186.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97264 R8949_RS13535 WP_011098432.1 2747943..2748380(-) (ssb) [Clostridium tetani strain NIID-072000-002]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97264 R8949_RS13535 WP_011098432.1 2747943..2748380(-) (ssb) [Clostridium tetani strain NIID-072000-002]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAACGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTACATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372