Detailed information NTG0097248

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R9A53_RS13675
• Genome accession: NZ_AP026823
• Coordinates: 2797345..2797782 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain NIID-071400-001
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2792345..2802782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R9A53_RS13650 (N071400001_26510)	rplI	2793104..2793547 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R9A53_RS13655 (N071400001_26520)	-	2793544..2795538 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
R9A53_RS13660 (N071400001_26530)	-	2795551..2796540 (-)	990	WP_035141193.1	YybS family protein	-
R9A53_RS13665 (N071400001_26540)	-	2796554..2796871 (-)	318	WP_011098433.1	MazG-like family protein	-
R9A53_RS13670 (N071400001_26550)	rpsR	2797058..2797324 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R9A53_RS13675 (N071400001_26560)	ssb	2797345..2797782 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R9A53_RS13680 (N071400001_26570)	rpsF	2797798..2798082 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R9A53_RS13685 (N071400001_26580)	-	2798180..2798380 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R9A53_RS13690 (N071400001_26590)	-	2798373..2799257 (-)	885	WP_035141191.1	mechanosensitive ion channel family protein	-
R9A53_RS13695 (N071400001_26600)	ytvI	2799507..2800562 (+)	1056	WP_035141190.1	sporulation integral membrane protein YtvI	-
R9A53_RS13700 (N071400001_26610)	yyaC	2800617..2801192 (+)	576	WP_035141189.1	spore protease YyaC	-
R9A53_RS13705 (N071400001_26620)	-	2801214..2801711 (-)	498	WP_035141188.1	DUF4446 family protein	-
R9A53_RS13710 (N071400001_26630)	-	2801751..2802608 (-)	858	WP_035141186.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97248 R9A53_RS13675 WP_011098432.1 2797345..2797782(-) (ssb) [Clostridium tetani strain NIID-071400-001]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97248 R9A53_RS13675 WP_011098432.1 2797345..2797782(-) (ssb) [Clostridium tetani strain NIID-071400-001]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAACGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTACATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372