Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WOC48_RS03335 Genome accession   NZ_CP150777
Coordinates   665986..666411 (-) Length   141 a.a.
NCBI ID   WP_015978401.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20825     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 632042..678983 665986..666411 within 0


Gene organization within MGE regions


Location: 632042..678983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC48_RS03100 (WOC48_03090) - 632042..632599 (-) 558 WP_000528632.1 PBECR4 domain-containing protein -
  WOC48_RS03105 (WOC48_03095) - 633258..634703 (-) 1446 WP_338627880.1 SH3 domain-containing protein -
  WOC48_RS03110 (WOC48_03100) - 634684..635121 (-) 438 WP_000354134.1 phage holin -
  WOC48_RS03115 (WOC48_03105) - 635177..635572 (-) 396 WP_042855627.1 hypothetical protein -
  WOC48_RS03120 (WOC48_03110) - 635577..636815 (-) 1239 WP_117222187.1 BppU family phage baseplate upper protein -
  WOC48_RS03125 (WOC48_03115) - 636828..638702 (-) 1875 WP_261921315.1 glucosaminidase domain-containing protein -
  WOC48_RS03130 (WOC48_03120) - 638839..639139 (-) 301 Protein_622 DUF2951 domain-containing protein -
  WOC48_RS03135 (WOC48_03125) - 639180..639353 (-) 174 WP_001790193.1 XkdX family protein -
  WOC48_RS03140 (WOC48_03130) - 639357..639734 (-) 378 WP_000705910.1 DUF2977 domain-containing protein -
  WOC48_RS03145 (WOC48_03135) - 639734..641557 (-) 1824 WP_261921314.1 phage baseplate upper protein -
  WOC48_RS03150 (WOC48_03140) - 641557..643455 (-) 1899 WP_054189010.1 hypothetical protein -
  WOC48_RS03155 (WOC48_03145) - 643468..645354 (-) 1887 WP_038412588.1 SGNH/GDSL hydrolase family protein -
  WOC48_RS03160 (WOC48_03150) - 645365..646306 (-) 942 WP_000560181.1 phage tail domain-containing protein -
  WOC48_RS03165 (WOC48_03155) - 646321..649206 (-) 2886 WP_368409628.1 terminase -
  WOC48_RS03170 (WOC48_03160) - 649210..649494 (-) 285 WP_000880587.1 hypothetical protein -
  WOC48_RS03175 (WOC48_03165) - 649539..650045 (-) 507 WP_000134337.1 tail assembly chaperone -
  WOC48_RS03180 (WOC48_03170) - 650112..650669 (-) 558 WP_000057583.1 hypothetical protein -
  WOC48_RS03185 (WOC48_03175) - 650670..651095 (-) 426 WP_000270192.1 DUF3168 domain-containing protein -
  WOC48_RS03190 (WOC48_03180) - 651108..651521 (-) 414 WP_001151330.1 HK97-gp10 family putative phage morphogenesis protein -
  WOC48_RS03195 (WOC48_03185) - 651508..651843 (-) 336 WP_000483041.1 phage head closure protein -
  WOC48_RS03200 (WOC48_03190) - 651855..652205 (-) 351 WP_000177351.1 phage head-tail adapter protein -
  WOC48_RS03205 (WOC48_03195) - 652211..652354 (-) 144 WP_000002931.1 hypothetical protein -
  WOC48_RS03210 (WOC48_03200) - 652366..653280 (-) 915 WP_000235168.1 phage major capsid protein -
  WOC48_RS03215 (WOC48_03205) - 653297..653881 (-) 585 WP_001019219.1 DUF4355 domain-containing protein -
  WOC48_RS03220 (WOC48_03210) - 653984..654190 (-) 207 WP_000346033.1 hypothetical protein -
  WOC48_RS03225 (WOC48_03215) - 654192..655145 (-) 954 WP_000184133.1 phage head morphogenesis protein -
  WOC48_RS03230 (WOC48_03220) - 655114..656538 (-) 1425 WP_000177426.1 phage portal protein -
  WOC48_RS03235 (WOC48_03225) - 656535..657758 (-) 1224 WP_338627878.1 PBSX family phage terminase large subunit -
  WOC48_RS03240 (WOC48_03230) - 657751..658245 (-) 495 WP_000594079.1 terminase small subunit -
  WOC48_RS03245 (WOC48_03235) - 658598..658999 (-) 402 WP_000286968.1 hypothetical protein -
  WOC48_RS03250 (WOC48_03240) rinB 659000..659173 (-) 174 WP_001657250.1 transcriptional activator RinB -
  WOC48_RS03255 (WOC48_03245) - 659166..659369 (-) 204 WP_261921313.1 hypothetical protein -
  WOC48_RS03260 (WOC48_03250) - 659366..659560 (-) 195 WP_000132920.1 hypothetical protein -
  WOC48_RS03265 (WOC48_03255) - 659557..659763 (-) 207 WP_000195785.1 DUF1381 domain-containing protein -
  WOC48_RS03270 (WOC48_03260) - 659800..660309 (-) 510 WP_000185636.1 dUTP diphosphatase -
  WOC48_RS03275 (WOC48_03265) - 660314..660550 (-) 237 WP_001065079.1 DUF1024 family protein -
  WOC48_RS03280 (WOC48_03270) - 660565..660813 (-) 249 WP_001126846.1 phi PVL orf 51-like protein -
  WOC48_RS03285 (WOC48_03275) - 660814..661173 (-) 360 WP_001668922.1 SA1788 family PVL leukocidin-associated protein -
  WOC48_RS03290 (WOC48_03280) - 661174..661359 (-) 186 WP_001187264.1 DUF3113 family protein -
  WOC48_RS03295 (WOC48_03285) - 661359..661766 (-) 408 WP_000401950.1 RusA family crossover junction endodeoxyribonuclease -
  WOC48_RS03300 (WOC48_03290) - 661776..661997 (-) 222 WP_001123684.1 DUF3269 family protein -
  WOC48_RS03305 (WOC48_03295) - 662010..662168 (-) 159 WP_000256597.1 hypothetical protein -
  WOC48_RS03310 (WOC48_03300) - 662162..662941 (-) 780 WP_001668921.1 ATP-binding protein -
  WOC48_RS03315 (WOC48_03305) - 662951..663721 (-) 771 WP_261921312.1 conserved phage C-terminal domain-containing protein -
  WOC48_RS03320 (WOC48_03310) - 663786..664643 (+) 858 WP_000371250.1 DUF4393 domain-containing protein -
  WOC48_RS03325 (WOC48_03315) - 664749..665423 (-) 675 WP_029753391.1 putative HNHc nuclease -
  WOC48_RS03330 (WOC48_03320) - 665424..665975 (-) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  WOC48_RS03335 (WOC48_03325) ssbA 665986..666411 (-) 426 WP_015978401.1 single-stranded DNA-binding protein Machinery gene
  WOC48_RS03340 (WOC48_03330) - 666411..667034 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  WOC48_RS03345 (WOC48_03335) - 667027..667248 (-) 222 WP_000815401.1 DUF2483 family protein -
  WOC48_RS03350 (WOC48_03340) - 667258..667518 (-) 261 WP_000291089.1 DUF1108 family protein -
  WOC48_RS03355 (WOC48_03345) - 667610..667771 (-) 162 WP_001668917.1 DUF1270 family protein -
  WOC48_RS03360 (WOC48_03350) - 667951..668598 (+) 648 WP_086153461.1 hypothetical protein -
  WOC48_RS03365 (WOC48_03355) - 668620..668763 (-) 144 WP_000939498.1 hypothetical protein -
  WOC48_RS03370 (WOC48_03360) tscA 668803..669027 (-) 225 WP_000187184.1 type II toxin-antitoxin system antitoxin TscA -
  WOC48_RS03375 (WOC48_03365) - 669028..669801 (-) 774 WP_001148549.1 phage antirepressor KilAC domain-containing protein -
  WOC48_RS03380 (WOC48_03370) - 669824..670051 (-) 228 WP_000192117.1 helix-turn-helix transcriptional regulator -
  WOC48_RS03385 (WOC48_03375) - 670205..670837 (+) 633 WP_000901358.1 LexA family transcriptional regulator -
  WOC48_RS03390 (WOC48_03380) - 670888..671433 (+) 546 WP_261921311.1 Ltp family lipoprotein -
  WOC48_RS03395 (WOC48_03385) - 671549..672229 (+) 681 WP_000392106.1 type II toxin-antitoxin system PemK/MazF family toxin -
  WOC48_RS03400 (WOC48_03390) - 672436..673821 (+) 1386 WP_000861313.1 recombinase family protein -
  WOC48_RS03405 (WOC48_03395) rpmF 673938..674111 (-) 174 WP_000290472.1 50S ribosomal protein L32 -
  WOC48_RS03410 (WOC48_03400) - 674191..674748 (-) 558 WP_000872158.1 DUF177 domain-containing protein -
  WOC48_RS03415 (WOC48_03405) - 674875..676014 (+) 1140 WP_000843611.1 nucleotidyltransferase -
  WOC48_RS03420 (WOC48_03410) coaD 676076..676558 (-) 483 WP_000401377.1 pantetheine-phosphate adenylyltransferase -
  WOC48_RS03425 (WOC48_03415) rsmD 676560..677102 (-) 543 WP_001263796.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WOC48_RS03430 (WOC48_03420) - 677172..677561 (+) 390 WP_000814565.1 hypothetical protein -
  WOC48_RS03435 (WOC48_03425) - 677564..677818 (-) 255 WP_001049150.1 YlbG family protein -
  WOC48_RS03440 (WOC48_03430) - 678057..678983 (+) 927 WP_000757597.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15947.45 Da        Isoelectric Point: 5.8790

>NTDB_id=972437 WOC48_RS03335 WP_015978401.1 665986..666411(-) (ssbA) [Staphylococcus aureus strain TUM20825]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=972437 WOC48_RS03335 WP_015978401.1 665986..666411(-) (ssbA) [Staphylococcus aureus strain TUM20825]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

74.576

83.688

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.553

100

0.426
  ssbA Streptococcus mutans UA159

41.844

100

0.418
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.688

0.376
  ssbB/cilA Streptococcus mitis SK321

44.915

83.688

0.376

Multiple sequence alignment