Detailed information NTG0097232

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R8893_RS14055
• Genome accession: NZ_AP026821
• Coordinates: 2850803..2851240 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-254310-026
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2845803..2856240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8893_RS14030 (K254310026_27000)	rplI	2846562..2847005 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R8893_RS14035 (K254310026_27010)	-	2847002..2848996 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
R8893_RS14040 (K254310026_27020)	-	2849009..2849998 (-)	990	WP_011098434.1	YybS family protein	-
R8893_RS14045 (K254310026_27030)	-	2850012..2850329 (-)	318	WP_011098433.1	MazG-like family protein	-
R8893_RS14050 (K254310026_27040)	rpsR	2850516..2850782 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R8893_RS14055 (K254310026_27050)	ssb	2850803..2851240 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R8893_RS14060 (K254310026_27060)	rpsF	2851256..2851540 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R8893_RS14065 (K254310026_27070)	-	2851638..2851838 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R8893_RS14070 (K254310026_27080)	-	2851831..2852715 (-)	885	WP_115606164.1	mechanosensitive ion channel family protein	-
R8893_RS14075 (K254310026_27090)	ytvI	2852952..2854007 (+)	1056	WP_011098430.1	sporulation integral membrane protein YtvI	-
R8893_RS14080 (K254310026_27100)	yyaC	2854063..2854638 (+)	576	WP_011098429.1	spore protease YyaC	-
R8893_RS14085 (K254310026_27110)	-	2854660..2855157 (-)	498	WP_011098428.1	DUF4446 family protein	-
R8893_RS14090 (K254310026_27120)	-	2855197..2856054 (-)	858	WP_115606166.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97232 R8893_RS14055 WP_011098432.1 2850803..2851240(-) (ssb) [Clostridium tetani strain KHSU-254310-026]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97232 R8893_RS14055 WP_011098432.1 2850803..2851240(-) (ssb) [Clostridium tetani strain KHSU-254310-026]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAATGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTATATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372