Detailed information NTG0097216

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R8905_RS13890
• Genome accession: NZ_AP026818
• Coordinates: 2801188..2801625 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-234311-028
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2796188..2806625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8905_RS13865 (K234311028_26650)	rplI	2796947..2797390 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R8905_RS13870 (K234311028_26660)	-	2797387..2799381 (-)	1995	WP_129030727.1	DHH family phosphoesterase	-
R8905_RS13875 (K234311028_26670)	-	2799394..2800383 (-)	990	WP_317719957.1	YybS family protein	-
R8905_RS13880 (K234311028_26680)	-	2800397..2800714 (-)	318	WP_011098433.1	MazG-like family protein	-
R8905_RS13885 (K234311028_26690)	rpsR	2800901..2801167 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R8905_RS13890 (K234311028_26700)	ssb	2801188..2801625 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R8905_RS13895 (K234311028_26710)	rpsF	2801641..2801925 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R8905_RS13900 (K234311028_26720)	-	2802023..2802223 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R8905_RS13905 (K234311028_26730)	-	2802216..2803100 (-)	885	WP_129030729.1	mechanosensitive ion channel family protein	-
R8905_RS13910 (K234311028_26740)	ytvI	2803350..2804405 (+)	1056	WP_035141190.1	sporulation integral membrane protein YtvI	-
R8905_RS13915 (K234311028_26750)	yyaC	2804460..2805035 (+)	576	WP_035141189.1	spore protease YyaC	-
R8905_RS13920 (K234311028_26760)	-	2805057..2805554 (-)	498	WP_035141188.1	DUF4446 family protein	-
R8905_RS13925 (K234311028_26770)	-	2805594..2806451 (-)	858	WP_035141186.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97216 R8905_RS13890 WP_011098432.1 2801188..2801625(-) (ssb) [Clostridium tetani strain KHSU-234311-028]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97216 R8905_RS13890 WP_011098432.1 2801188..2801625(-) (ssb) [Clostridium tetani strain KHSU-234311-028]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAACGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTACATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372