Detailed information NTG0097200

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R8916_RS13475
• Genome accession: NZ_AP026816
• Coordinates: 2737913..2738350 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-154307-017
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2732913..2743350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8916_RS13450 (K154307017_25850)	rplI	2733672..2734115 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R8916_RS13455 (K154307017_25860)	-	2734112..2736106 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
R8916_RS13460 (K154307017_25870)	-	2736119..2737108 (-)	990	WP_011098434.1	YybS family protein	-
R8916_RS13465 (K154307017_25880)	-	2737122..2737439 (-)	318	WP_011098433.1	MazG-like family protein	-
R8916_RS13470 (K154307017_25890)	rpsR	2737626..2737892 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R8916_RS13475 (K154307017_25900)	ssb	2737913..2738350 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R8916_RS13480 (K154307017_25910)	rpsF	2738366..2738650 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R8916_RS13485 (K154307017_25920)	-	2738748..2738948 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R8916_RS13490 (K154307017_25930)	-	2738941..2739825 (-)	885	WP_129009738.1	mechanosensitive ion channel family protein	-
R8916_RS13495 (K154307017_25940)	ytvI	2740062..2741117 (+)	1056	WP_011098430.1	sporulation integral membrane protein YtvI	-
R8916_RS13500 (K154307017_25950)	yyaC	2741173..2741748 (+)	576	WP_011098429.1	spore protease YyaC	-
R8916_RS13505 (K154307017_25960)	-	2741770..2742267 (-)	498	WP_129028828.1	DUF4446 family protein	-
R8916_RS13510 (K154307017_25970)	-	2742307..2743164 (-)	858	WP_011098427.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97200 R8916_RS13475 WP_011098432.1 2737913..2738350(-) (ssb) [Clostridium tetani strain KHSU-154307-017]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97200 R8916_RS13475 WP_011098432.1 2737913..2738350(-) (ssb) [Clostridium tetani strain KHSU-154307-017]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAATGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTATATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372