Detailed information NTG0097184

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R9A01_RS13535
• Genome accession: NZ_AP026814
• Coordinates: 2788037..2788474 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-154306-013
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2783037..2793474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R9A01_RS13510 (K154306013_25870)	rplI	2783796..2784239 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R9A01_RS13515 (K154306013_25880)	-	2784236..2786230 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
R9A01_RS13520 (K154306013_25890)	-	2786243..2787232 (-)	990	WP_035141193.1	YybS family protein	-
R9A01_RS13525 (K154306013_25900)	-	2787246..2787563 (-)	318	WP_011098433.1	MazG-like family protein	-
R9A01_RS13530 (K154306013_25910)	rpsR	2787750..2788016 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R9A01_RS13535 (K154306013_25920)	ssb	2788037..2788474 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R9A01_RS13540 (K154306013_25930)	rpsF	2788490..2788774 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R9A01_RS13545 (K154306013_25940)	-	2788872..2789072 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R9A01_RS13550 (K154306013_25950)	-	2789065..2789910 (-)	846	WP_317729185.1	mechanosensitive ion channel family protein	-
R9A01_RS13555 (K154306013_25960)	ytvI	2790199..2791254 (+)	1056	WP_035141190.1	sporulation integral membrane protein YtvI	-
R9A01_RS13560 (K154306013_25970)	yyaC	2791309..2791884 (+)	576	WP_035141189.1	spore protease YyaC	-
R9A01_RS13565 (K154306013_25980)	-	2791906..2792403 (-)	498	WP_035141188.1	DUF4446 family protein	-
R9A01_RS13570 (K154306013_25990)	-	2792443..2793300 (-)	858	WP_035141186.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97184 R9A01_RS13535 WP_011098432.1 2788037..2788474(-) (ssb) [Clostridium tetani strain KHSU-154306-013]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97184 R9A01_RS13535 WP_011098432.1 2788037..2788474(-) (ssb) [Clostridium tetani strain KHSU-154306-013]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAACGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTACATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372