Detailed information NTG0097168

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R9B82_RS14335
• Genome accession: NZ_AP026811
• Coordinates: 2850253..2850690 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-144316-041
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2845253..2855690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R9B82_RS14310 (K144316041_27580)	rplI	2846012..2846455 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R9B82_RS14315 (K144316041_27590)	-	2846452..2848446 (-)	1995	WP_129030727.1	DHH family phosphoesterase	-
R9B82_RS14320 (K144316041_27600)	-	2848459..2849448 (-)	990	WP_317719957.1	YybS family protein	-
R9B82_RS14325 (K144316041_27610)	-	2849462..2849779 (-)	318	WP_011098433.1	MazG-like family protein	-
R9B82_RS14330 (K144316041_27620)	rpsR	2849966..2850232 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R9B82_RS14335 (K144316041_27630)	ssb	2850253..2850690 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R9B82_RS14340 (K144316041_27640)	rpsF	2850706..2850990 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R9B82_RS14345 (K144316041_27650)	-	2851088..2851288 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R9B82_RS14350 (K144316041_27660)	-	2851281..2852165 (-)	885	WP_129030729.1	mechanosensitive ion channel family protein	-
R9B82_RS14355 (K144316041_27670)	ytvI	2852415..2853470 (+)	1056	WP_035141190.1	sporulation integral membrane protein YtvI	-
R9B82_RS14360 (K144316041_27680)	yyaC	2853525..2854100 (+)	576	WP_035141189.1	spore protease YyaC	-
R9B82_RS14365 (K144316041_27690)	-	2854122..2854619 (-)	498	WP_035141188.1	DUF4446 family protein	-
R9B82_RS14370 (K144316041_27700)	-	2854659..2855516 (-)	858	WP_035141186.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97168 R9B82_RS14335 WP_011098432.1 2850253..2850690(-) (ssb) [Clostridium tetani strain KHSU-144316-041]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97168 R9B82_RS14335 WP_011098432.1 2850253..2850690(-) (ssb) [Clostridium tetani strain KHSU-144316-041]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAACGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTACATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372