Detailed information NTG0097152

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R8898_RS13180
• Genome accession: NZ_AP026808
• Coordinates: 2721426..2721863 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-144313-037
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2716426..2726863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8898_RS13155 (K144313037_25230)	rplI	2717185..2717628 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R8898_RS13160 (K144313037_25240)	-	2717625..2719619 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
R8898_RS13165 (K144313037_25250)	-	2719632..2720621 (-)	990	WP_011098434.1	YybS family protein	-
R8898_RS13170 (K144313037_25260)	-	2720635..2720952 (-)	318	WP_011098433.1	MazG-like family protein	-
R8898_RS13175 (K144313037_25270)	rpsR	2721139..2721405 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R8898_RS13180 (K144313037_25280)	ssb	2721426..2721863 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R8898_RS13185 (K144313037_25290)	rpsF	2721879..2722163 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R8898_RS13190 (K144313037_25300)	-	2722261..2722461 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R8898_RS13195 (K144313037_25310)	-	2722454..2723338 (-)	885	WP_129009738.1	mechanosensitive ion channel family protein	-
R8898_RS13200 (K144313037_25320)	ytvI	2723575..2724630 (+)	1056	WP_011098430.1	sporulation integral membrane protein YtvI	-
R8898_RS13205 (K144313037_25330)	yyaC	2724686..2725261 (+)	576	WP_011098429.1	spore protease YyaC	-
R8898_RS13210 (K144313037_25340)	-	2725283..2725780 (-)	498	WP_129028828.1	DUF4446 family protein	-
R8898_RS13215 (K144313037_25350)	-	2725820..2726677 (-)	858	WP_011098427.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97152 R8898_RS13180 WP_011098432.1 2721426..2721863(-) (ssb) [Clostridium tetani strain KHSU-144313-037]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97152 R8898_RS13180 WP_011098432.1 2721426..2721863(-) (ssb) [Clostridium tetani strain KHSU-144313-037]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAATGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTATATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372