Detailed information NTG0097136

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: R8897_RS14100
• Genome accession: NZ_AP026806
• Coordinates: 2835592..2836029 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-144312-032
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2830592..2841029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8897_RS14075 (K144312032_27160)	rplI	2831351..2831794 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
R8897_RS14080 (K144312032_27170)	-	2831791..2833785 (-)	1995	WP_129030727.1	DHH family phosphoesterase	-
R8897_RS14085 (K144312032_27180)	-	2833798..2834787 (-)	990	WP_317719957.1	YybS family protein	-
R8897_RS14090 (K144312032_27190)	-	2834801..2835118 (-)	318	WP_011098433.1	MazG-like family protein	-
R8897_RS14095 (K144312032_27200)	rpsR	2835305..2835571 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
R8897_RS14100 (K144312032_27210)	ssb	2835592..2836029 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
R8897_RS14105 (K144312032_27220)	rpsF	2836045..2836329 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
R8897_RS14110 (K144312032_27230)	-	2836427..2836627 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
R8897_RS14115 (K144312032_27240)	-	2836620..2837504 (-)	885	WP_129030729.1	mechanosensitive ion channel family protein	-
R8897_RS14120 (K144312032_27250)	ytvI	2837754..2838809 (+)	1056	WP_035141190.1	sporulation integral membrane protein YtvI	-
R8897_RS14125 (K144312032_27260)	yyaC	2838864..2839439 (+)	576	WP_035141189.1	spore protease YyaC	-
R8897_RS14130 (K144312032_27270)	-	2839461..2839958 (-)	498	WP_035141188.1	DUF4446 family protein	-
R8897_RS14135 (K144312032_27280)	-	2839998..2840855 (-)	858	WP_035141186.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=97136 R8897_RS14100 WP_011098432.1 2835592..2836029(-) (ssb) [Clostridium tetani strain KHSU-144312-032]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=97136 R8897_RS14100 WP_011098432.1 2835592..2836029(-) (ssb) [Clostridium tetani strain KHSU-144312-032]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAACGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTACATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372