Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VT188_RS00105 Genome accession   NZ_CP177358
Coordinates   22390..23478 (+) Length   362 a.a.
NCBI ID   WP_327213170.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CWC0815     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17390..28478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT188_RS00085 (VT188_000085) rsmB 18285..19589 (-) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VT188_RS00090 (VT188_000090) fmt 19586..20530 (-) 945 WP_023119020.1 methionyl-tRNA formyltransferase -
  VT188_RS00095 (VT188_000095) def 20585..21091 (-) 507 WP_003107059.1 peptide deformylase -
  VT188_RS00100 (VT188_000100) tsaP 21230..22255 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  VT188_RS00105 (VT188_000105) dprA 22390..23478 (+) 1089 WP_327213170.1 DNA-processing protein DprA Machinery gene
  VT188_RS00110 (VT188_000110) - 23519..24076 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  VT188_RS00115 (VT188_000115) - 24086..25063 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  VT188_RS00120 (VT188_000120) hemF 25254..26171 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  VT188_RS00125 (VT188_000125) aroE 26229..27053 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  VT188_RS00130 (VT188_000130) - 27164..28150 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37700.29 Da        Isoelectric Point: 7.6075

>NTDB_id=970450 VT188_RS00105 WP_327213170.1 22390..23478(+) (dprA) [Pseudomonas aeruginosa strain CWC0815]
MKNHSPAELEARLRLHGLPKLGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAVAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=970450 VT188_RS00105 WP_327213170.1 22390..23478(+) (dprA) [Pseudomonas aeruginosa strain CWC0815]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCAAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGTCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

43.316

100

0.448
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.316

100

0.448
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.017

98.895

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.535

98.066

0.417
  dprA Acinetobacter baumannii D1279779

38.462

96.961

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37