Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OO966_RS14745 Genome accession   NZ_AP026780
Coordinates   3161778..3162872 (-) Length   364 a.a.
NCBI ID   WP_005302146.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain 04Ya311     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3156778..3167872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO966_RS14715 (PDY_26990) hemF 3157291..3158202 (-) 912 WP_264954624.1 oxygen-dependent coproporphyrinogen oxidase -
  OO966_RS14720 (PDY_27000) - 3158206..3158763 (-) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  OO966_RS14725 (PDY_27010) purE 3158957..3159442 (+) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OO966_RS14730 (PDY_27020) - 3159445..3160566 (+) 1122 WP_264954626.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OO966_RS14735 (PDY_27030) - 3160634..3161191 (-) 558 WP_005302142.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  OO966_RS14740 (PDY_27040) - 3161302..3161775 (-) 474 WP_036764597.1 DUF494 family protein -
  OO966_RS14745 (PDY_27050) dprA 3161778..3162872 (-) 1095 WP_005302146.1 DNA-processing protein DprA Machinery gene
  OO966_RS14750 (PDY_27060) - 3162875..3163933 (-) 1059 WP_138241216.1 LysM peptidoglycan-binding domain-containing protein -
  OO966_RS14755 (PDY_27070) def 3164222..3164734 (+) 513 WP_068945797.1 peptide deformylase -
  OO966_RS14760 (PDY_27080) fmt 3164747..3165691 (+) 945 WP_068945796.1 methionyl-tRNA formyltransferase -
  OO966_RS14765 (PDY_27090) rsmB 3165830..3167107 (+) 1278 WP_264954627.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39164.20 Da        Isoelectric Point: 6.4262

>NTDB_id=96965 OO966_RS14745 WP_005302146.1 3161778..3162872(-) (dprA) [Photobacterium damselae subsp. damselae strain 04Ya311]
MDNIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPASRGCNALIKSGAKLVESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=96965 OO966_RS14745 WP_005302146.1 3161778..3162872(-) (dprA) [Photobacterium damselae subsp. damselae strain 04Ya311]
ATGGACAATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
TGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTCGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTAGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCCGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
TATTGTTGAGCAGGGTGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGGGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGCCGAGAGGTCTTTGCTATACCTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGGTAGGTGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.923

99.725

0.558
  dprA Vibrio cholerae strain A1552

51.587

100

0.536
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.631

100

0.442
  dprA Haemophilus influenzae Rd KW20

46.018

93.132

0.429
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368

Multiple sequence alignment