Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACJVG6_RS09460 Genome accession   NZ_CP177180
Coordinates   1997902..1998294 (-) Length   130 a.a.
NCBI ID   WP_002885697.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1992902..2003294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS09420 dapD 1992972..1993670 (-) 699 WP_002886999.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ACJVG6_RS09425 - 1993756..1994508 (-) 753 WP_002887000.1 HAD family hydrolase -
  ACJVG6_RS09430 - 1994622..1995461 (-) 840 WP_002887001.1 methyltransferase domain-containing protein -
  ACJVG6_RS09440 - 1995882..1996040 (+) 159 WP_002885650.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  ACJVG6_RS09445 - 1996060..1996227 (+) 168 WP_002887002.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  ACJVG6_RS09450 - 1996275..1996526 (+) 252 WP_002887003.1 hypothetical protein -
  ACJVG6_RS09455 tadA 1996613..1997131 (-) 519 WP_002887004.1 tRNA adenosine(34) deaminase TadA -
  ACJVG6_RS09460 ssbA 1997902..1998294 (-) 393 WP_002885697.1 single-stranded DNA-binding protein Machinery gene
  ACJVG6_RS09465 - 1998723..1999400 (-) 678 WP_002887005.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVG6_RS09470 ytpR 1999667..2000290 (-) 624 WP_002885779.1 YtpR family tRNA-binding protein -
  ACJVG6_RS09475 - 2000322..2000846 (-) 525 WP_002885713.1 hypothetical protein -
  ACJVG6_RS09480 - 2000850..2001164 (-) 315 WP_002887006.1 thioredoxin family protein -
  ACJVG6_RS09485 - 2001161..2001445 (-) 285 WP_002885838.1 DUF4651 domain-containing protein -
  ACJVG6_RS09490 pepA 2001545..2002612 (+) 1068 WP_002887007.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14759.67 Da        Isoelectric Point: 5.9275

>NTDB_id=969638 ACJVG6_RS09460 WP_002885697.1 1997902..1998294(-) (ssbA) [Streptococcus salivarius strain MRD-KRBY]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLVLEEELPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=969638 ACJVG6_RS09460 WP_002885697.1 1997902..1998294(-) (ssbA) [Streptococcus salivarius strain MRD-KRBY]
ATGTATAACAAAGTTATTTTAATTGGACGTTTGACGGCGACTCCTGAAATGGTAAAAACTGCTAGCGATAGGTCTTTTAC
ACGTGTTACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCATCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACTCGT
AAGTACGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTCGTCTTGGAAGAAGAACTTCCCTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.815
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.769
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.769
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.762
  ssbB/cilA Streptococcus pneumoniae R6

75.573

100

0.762
  ssbB/cilA Streptococcus pneumoniae Rx1

75.573

100

0.762
  ssbB/cilA Streptococcus pneumoniae D39

75.573

100

0.762
  ssbB/cilA Streptococcus mitis NCTC 12261

74.046

100

0.746
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

86.154

0.531
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

81.538

0.392
  ssb Latilactobacillus sakei subsp. sakei 23K

47.17

81.538

0.385