Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MHB50_RS00720 Genome accession   NZ_CP150282
Coordinates   146710..147093 (+) Length   127 a.a.
NCBI ID   WP_340084701.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL H7-0308     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 141710..152093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB50_RS00690 (MHB50_00690) - 142684..143463 (+) 780 WP_340084697.1 flagellar hook-basal body protein -
  MHB50_RS00695 (MHB50_00695) - 143482..144312 (+) 831 WP_340084698.1 flagellar hook-basal body protein -
  MHB50_RS00700 (MHB50_00700) - 144345..144620 (+) 276 WP_340084699.1 DNA-directed RNA polymerase subunit beta -
  MHB50_RS00705 (MHB50_00705) fabZ 145068..145493 (+) 426 WP_340084700.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MHB50_RS00710 (MHB50_00710) - 145684..145971 (+) 288 WP_339161123.1 hypothetical protein -
  MHB50_RS00715 (MHB50_00715) - 145999..146439 (-) 441 WP_339161124.1 YwpF family protein -
  MHB50_RS00720 (MHB50_00720) ssbB 146710..147093 (+) 384 WP_340084701.1 single-stranded DNA-binding protein Machinery gene
  MHB50_RS00725 (MHB50_00725) - 147090..147275 (+) 186 WP_339161127.1 hypothetical protein -
  MHB50_RS00730 (MHB50_00730) - 147474..149000 (-) 1527 WP_339161129.1 alkaline phosphatase -
  MHB50_RS00735 (MHB50_00735) - 149132..150205 (-) 1074 WP_340084702.1 LysM peptidoglycan-binding domain-containing protein -
  MHB50_RS00740 (MHB50_00740) megL 150405..151592 (+) 1188 WP_340084703.1 methionine gamma-lyase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14317.39 Da        Isoelectric Point: 8.4321

>NTDB_id=969383 MHB50_RS00720 WP_340084701.1 146710..147093(+) (ssbB) [Siminovitchia sp. FSL H7-0308]
MINQVTLVGRLTKDPELRYTMEGRAVLNIMLALNRHYKNANGEYDADFVLCTLWNKTAENTAKYCSKGSVIGVIGKIQTR
YYEDQDGKRVYVTEVMADSVKFMGGKPARESPSKSPAETLEFKEVNV

Nucleotide


Download         Length: 384 bp        

>NTDB_id=969383 MHB50_RS00720 WP_340084701.1 146710..147093(+) (ssbB) [Siminovitchia sp. FSL H7-0308]
TTGATTAACCAAGTAACGTTGGTAGGCAGGCTGACAAAGGATCCCGAGCTGCGGTATACAATGGAGGGGAGGGCTGTGCT
CAACATTATGCTCGCTTTAAACCGCCATTATAAAAATGCCAATGGTGAATATGACGCAGACTTCGTTCTATGTACTTTAT
GGAATAAGACCGCAGAAAACACTGCCAAATATTGCAGTAAAGGGTCCGTCATTGGTGTAATCGGTAAAATTCAAACGAGA
TATTATGAGGACCAAGATGGGAAAAGAGTATATGTGACCGAGGTAATGGCGGATTCTGTCAAGTTTATGGGCGGAAAGCC
GGCACGTGAAAGTCCTTCAAAATCGCCTGCTGAAACGCTTGAGTTTAAGGAGGTGAATGTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.355

84.252

0.559
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.282

81.102

0.465
  ssb Latilactobacillus sakei subsp. sakei 23K

51.818

86.614

0.449
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.119

85.827

0.37
  ssbB/cilA Streptococcus mitis NCTC 12261

43.119

85.827

0.37
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.119

85.827

0.37
  ssbB/cilA Streptococcus pneumoniae Rx1

42.202

85.827

0.362
  ssbB/cilA Streptococcus pneumoniae D39

42.202

85.827

0.362
  ssbB/cilA Streptococcus pneumoniae R6

42.202

85.827

0.362
  ssbB/cilA Streptococcus mitis SK321

42.202

85.827

0.362
  ssbA Streptococcus mutans UA159

42.202

85.827

0.362

Multiple sequence alignment