Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | NSQ78_RS17085 | Genome accession | NZ_CP150199 |
| Coordinates | 3665649..3666908 (+) | Length | 419 a.a. |
| NCBI ID | WP_064239077.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. FSL W7-1447 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3660649..3671908
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ78_RS17070 (NSQ78_17070) | pilB | 3661947..3663677 (-) | 1731 | WP_053506935.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NSQ78_RS17075 (NSQ78_17075) | - | 3663838..3664671 (-) | 834 | WP_064239075.1 | sterol desaturase family protein | - |
| NSQ78_RS17080 (NSQ78_17080) | pilA/pilAI | 3664866..3665294 (-) | 429 | WP_149901976.1 | pilin | Machinery gene |
| NSQ78_RS17085 (NSQ78_17085) | pilC | 3665649..3666908 (+) | 1260 | WP_064239077.1 | type II secretion system F family protein | Machinery gene |
| NSQ78_RS17090 (NSQ78_17090) | - | 3666912..3667775 (+) | 864 | WP_064239078.1 | A24 family peptidase | - |
| NSQ78_RS17095 (NSQ78_17095) | coaE | 3667787..3668398 (+) | 612 | WP_064239079.1 | dephospho-CoA kinase | - |
| NSQ78_RS17100 (NSQ78_17100) | - | 3669214..3669810 (-) | 597 | WP_149901977.1 | hypothetical protein | - |
| NSQ78_RS17105 (NSQ78_17105) | - | 3671145..3671531 (-) | 387 | WP_064239081.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 45932.27 Da Isoelectric Point: 10.1940
>NTDB_id=966062 NSQ78_RS17085 WP_064239077.1 3665649..3666908(+) (pilC) [Stenotrophomonas sp. FSL W7-1447]
MSVSGSAMKKEPVARSTTELQPFVWEGTDKRGVKMKGEQMAKNANLLRAELRRQGITPKAVKAKPKPIFGSTGSRITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNLRMKRMIGTIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIETLKGKIKKALFYPIMVMAVAILVSGILLVWVVPQFEDVFKGFGAELPAFTQLIVGVSRFLVSWWWL
ILFTFVGAIIGFIAAYKRSPKLQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
SVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPFIMVIIGGIV
GSIVIGMYLPIFKLAGAVG
MSVSGSAMKKEPVARSTTELQPFVWEGTDKRGVKMKGEQMAKNANLLRAELRRQGITPKAVKAKPKPIFGSTGSRITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNLRMKRMIGTIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIETLKGKIKKALFYPIMVMAVAILVSGILLVWVVPQFEDVFKGFGAELPAFTQLIVGVSRFLVSWWWL
ILFTFVGAIIGFIAAYKRSPKLQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
SVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPFIMVIIGGIV
GSIVIGMYLPIFKLAGAVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=966062 NSQ78_RS17085 WP_064239077.1 3665649..3666908(+) (pilC) [Stenotrophomonas sp. FSL W7-1447]
ATGTCTGTCAGTGGCAGTGCAATGAAGAAGGAACCCGTGGCGCGCAGCACCACGGAACTGCAGCCGTTTGTATGGGAGGG
GACCGACAAGCGGGGTGTGAAGATGAAAGGCGAGCAGATGGCAAAGAACGCCAATCTGTTGCGCGCAGAATTGAGACGCC
AGGGCATCACACCCAAAGCGGTGAAGGCGAAGCCAAAGCCTATTTTCGGCAGCACAGGCAGCAGGATTACGCCGAAGGAC
ATTGCCTTCTTCAGTCGCCAGATGGCAACCATGATGAAGTCGGGCGTGCCTATCGTCTCTTCACTCGAGATCATTGGCGA
AGGGCACAAGAACCTCCGGATGAAGAGGATGATCGGAACGATCCGCGCCGATATCGAGGGCGGCTCATCCTTATATGAGG
CGATCAGCAGACATCCAGTGCAGTTCGACGAACTGTATCGCAACCTGGTCCGCGCGGGCGAAGGCGCTGGCGTATTGGAG
ACCGTGCTTGACACGGTGGCCAACTACAAGGAGAACATCGAAACACTCAAGGGCAAGATCAAGAAGGCGCTGTTCTATCC
GATCATGGTCATGGCAGTCGCCATCCTGGTCAGTGGCATCCTACTTGTCTGGGTGGTCCCTCAATTCGAAGATGTCTTCA
AAGGCTTCGGAGCCGAATTGCCCGCTTTCACCCAGCTGATTGTTGGCGTTTCTCGCTTCTTGGTGTCTTGGTGGTGGCTG
ATCCTGTTCACTTTTGTGGGGGCGATAATTGGCTTCATCGCAGCCTACAAGCGCTCTCCGAAGCTGCAACACACGATGGA
CCGATTGATCCTGAGGGTGCCAGTGATCGGCCAGATCATGCACAACAGCTCAATTGCCCGCTTTGCACGTACCACTGCAG
TGACCTTCAAGGCCGGCGTGCCCTTGGTGGAGGCGTTGGGCATTGTCGCCGGCGCGACCGGCAACAAGGTCTACGAAGAG
TCCGTACTGCGGATGCGTGACGACGTGTCGGTCGGCTACCCCGTGAACATGGCCATGAAGCAGCTGAACCTATTTCCTCA
TATGGTCATCCAGATGACCGGCATCGGCGAGGAGGCCGGTGCTCTGGACGCGATGCTGTTCAAGGTCGCCGAGTACTATG
AGCAAGAAGTCAACAATGCCGTGGACGCATTGAGCAGTCTGCTTGAACCTTTCATCATGGTCATCATTGGCGGAATCGTC
GGCAGCATCGTGATCGGCATGTACCTGCCGATCTTCAAGCTCGCAGGAGCGGTAGGATAA
ATGTCTGTCAGTGGCAGTGCAATGAAGAAGGAACCCGTGGCGCGCAGCACCACGGAACTGCAGCCGTTTGTATGGGAGGG
GACCGACAAGCGGGGTGTGAAGATGAAAGGCGAGCAGATGGCAAAGAACGCCAATCTGTTGCGCGCAGAATTGAGACGCC
AGGGCATCACACCCAAAGCGGTGAAGGCGAAGCCAAAGCCTATTTTCGGCAGCACAGGCAGCAGGATTACGCCGAAGGAC
ATTGCCTTCTTCAGTCGCCAGATGGCAACCATGATGAAGTCGGGCGTGCCTATCGTCTCTTCACTCGAGATCATTGGCGA
AGGGCACAAGAACCTCCGGATGAAGAGGATGATCGGAACGATCCGCGCCGATATCGAGGGCGGCTCATCCTTATATGAGG
CGATCAGCAGACATCCAGTGCAGTTCGACGAACTGTATCGCAACCTGGTCCGCGCGGGCGAAGGCGCTGGCGTATTGGAG
ACCGTGCTTGACACGGTGGCCAACTACAAGGAGAACATCGAAACACTCAAGGGCAAGATCAAGAAGGCGCTGTTCTATCC
GATCATGGTCATGGCAGTCGCCATCCTGGTCAGTGGCATCCTACTTGTCTGGGTGGTCCCTCAATTCGAAGATGTCTTCA
AAGGCTTCGGAGCCGAATTGCCCGCTTTCACCCAGCTGATTGTTGGCGTTTCTCGCTTCTTGGTGTCTTGGTGGTGGCTG
ATCCTGTTCACTTTTGTGGGGGCGATAATTGGCTTCATCGCAGCCTACAAGCGCTCTCCGAAGCTGCAACACACGATGGA
CCGATTGATCCTGAGGGTGCCAGTGATCGGCCAGATCATGCACAACAGCTCAATTGCCCGCTTTGCACGTACCACTGCAG
TGACCTTCAAGGCCGGCGTGCCCTTGGTGGAGGCGTTGGGCATTGTCGCCGGCGCGACCGGCAACAAGGTCTACGAAGAG
TCCGTACTGCGGATGCGTGACGACGTGTCGGTCGGCTACCCCGTGAACATGGCCATGAAGCAGCTGAACCTATTTCCTCA
TATGGTCATCCAGATGACCGGCATCGGCGAGGAGGCCGGTGCTCTGGACGCGATGCTGTTCAAGGTCGCCGAGTACTATG
AGCAAGAAGTCAACAATGCCGTGGACGCATTGAGCAGTCTGCTTGAACCTTTCATCATGGTCATCATTGGCGGAATCGTC
GGCAGCATCGTGATCGGCATGTACCTGCCGATCTTCAAGCTCGCAGGAGCGGTAGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
50.99 |
96.42 |
0.492 |
| pilC | Pseudomonas stutzeri DSM 10701 |
51.768 |
94.511 |
0.489 |
| pilC | Acinetobacter baylyi ADP1 |
49.261 |
96.897 |
0.477 |
| pilC | Acinetobacter baumannii D1279779 |
48.866 |
94.749 |
0.463 |
| pilG | Neisseria gonorrhoeae MS11 |
43.467 |
94.988 |
0.413 |
| pilG | Neisseria meningitidis 44/76-A |
42.965 |
94.988 |
0.408 |
| pilC | Vibrio cholerae strain A1552 |
39.655 |
96.897 |
0.384 |
| pilC | Vibrio campbellii strain DS40M4 |
38.903 |
95.704 |
0.372 |
| pilC | Thermus thermophilus HB27 |
37.346 |
97.136 |
0.363 |