Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NST58_RS01565 | Genome accession | NZ_CP150178 |
| Coordinates | 333761..334183 (+) | Length | 140 a.a. |
| NCBI ID | WP_339245824.1 | Uniprot ID | - |
| Organism | Paenibacillus sp. FSL R10-2796 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 323523..349333 | 333761..334183 | within | 0 |
Gene organization within MGE regions
Location: 323523..349333
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST58_RS01480 (NST58_01480) | - | 323523..324965 (-) | 1443 | WP_339245789.1 | recombinase family protein | - |
| NST58_RS01485 (NST58_01485) | - | 325328..326011 (-) | 684 | WP_339245791.1 | DUF2569 domain-containing protein | - |
| NST58_RS01490 (NST58_01490) | - | 326174..326506 (+) | 333 | WP_339245794.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| NST58_RS01495 (NST58_01495) | - | 327100..327468 (-) | 369 | WP_339245795.1 | helix-turn-helix transcriptional regulator | - |
| NST58_RS01500 (NST58_01500) | - | 327656..327904 (+) | 249 | WP_339245796.1 | helix-turn-helix transcriptional regulator | - |
| NST58_RS01505 (NST58_01505) | - | 327918..328709 (+) | 792 | WP_339245798.1 | phage antirepressor KilAC domain-containing protein | - |
| NST58_RS01510 (NST58_01510) | - | 328711..329145 (+) | 435 | WP_076304695.1 | hypothetical protein | - |
| NST58_RS01515 (NST58_01515) | - | 329213..329344 (+) | 132 | WP_339245801.1 | hypothetical protein | - |
| NST58_RS01520 (NST58_01520) | - | 329337..329552 (+) | 216 | WP_339245805.1 | hypothetical protein | - |
| NST58_RS01525 (NST58_01525) | - | 329549..330310 (+) | 762 | WP_339245808.1 | hypothetical protein | - |
| NST58_RS01530 (NST58_01530) | - | 330300..330707 (+) | 408 | WP_339245810.1 | YopX family protein | - |
| NST58_RS01535 (NST58_01535) | - | 330700..330954 (+) | 255 | WP_339245811.1 | hypothetical protein | - |
| NST58_RS01540 (NST58_01540) | - | 330998..331168 (+) | 171 | WP_339245813.1 | hypothetical protein | - |
| NST58_RS01545 (NST58_01545) | - | 331155..331355 (+) | 201 | WP_339245815.1 | hypothetical protein | - |
| NST58_RS01550 (NST58_01550) | - | 331394..331516 (+) | 123 | WP_339245817.1 | hypothetical protein | - |
| NST58_RS01555 (NST58_01555) | - | 331554..332819 (+) | 1266 | WP_339245819.1 | AAA family ATPase | - |
| NST58_RS01560 (NST58_01560) | - | 332834..333757 (+) | 924 | WP_339245821.1 | AAA family ATPase | - |
| NST58_RS01565 (NST58_01565) | ssbA | 333761..334183 (+) | 423 | WP_339245824.1 | single-stranded DNA-binding protein | Machinery gene |
| NST58_RS01570 (NST58_01570) | - | 334198..334527 (+) | 330 | WP_339245826.1 | hypothetical protein | - |
| NST58_RS01575 (NST58_01575) | - | 334593..334967 (+) | 375 | WP_339245829.1 | YopX family protein | - |
| NST58_RS01580 (NST58_01580) | - | 335172..335372 (+) | 201 | WP_339245831.1 | hypothetical protein | - |
| NST58_RS01585 (NST58_01585) | - | 335369..335563 (+) | 195 | WP_339245834.1 | hypothetical protein | - |
| NST58_RS01590 (NST58_01590) | - | 335560..335769 (-) | 210 | WP_339248748.1 | helix-turn-helix transcriptional regulator | - |
| NST58_RS01595 (NST58_01595) | - | 335899..336051 (+) | 153 | WP_339245836.1 | hypothetical protein | - |
| NST58_RS01600 (NST58_01600) | - | 336054..336914 (+) | 861 | WP_339245839.1 | DUF4373 domain-containing protein | - |
| NST58_RS01605 (NST58_01605) | - | 336859..337686 (+) | 828 | WP_339245841.1 | ATP-binding protein | - |
| NST58_RS01610 (NST58_01610) | - | 337673..337804 (+) | 132 | WP_339245842.1 | hypothetical protein | - |
| NST58_RS01615 (NST58_01615) | - | 337948..338244 (+) | 297 | WP_339245845.1 | helix-turn-helix transcriptional regulator | - |
| NST58_RS01620 (NST58_01620) | - | 338748..339011 (+) | 264 | WP_339245847.1 | hypothetical protein | - |
| NST58_RS01625 (NST58_01625) | - | 339012..339428 (+) | 417 | WP_339245849.1 | hypothetical protein | - |
| NST58_RS01630 (NST58_01630) | - | 339425..339754 (+) | 330 | WP_339245851.1 | hypothetical protein | - |
| NST58_RS01635 (NST58_01635) | - | 339747..340190 (+) | 444 | WP_339245853.1 | hypothetical protein | - |
| NST58_RS01640 (NST58_01640) | - | 340291..340506 (+) | 216 | WP_339245856.1 | hypothetical protein | - |
| NST58_RS01645 (NST58_01645) | - | 340566..340931 (+) | 366 | WP_339245858.1 | hypothetical protein | - |
| NST58_RS01650 (NST58_01650) | - | 340928..341359 (+) | 432 | WP_339245861.1 | hypothetical protein | - |
| NST58_RS01655 (NST58_01655) | - | 341349..341513 (+) | 165 | WP_339245862.1 | hypothetical protein | - |
| NST58_RS01660 (NST58_01660) | - | 341516..341770 (+) | 255 | WP_339245864.1 | hypothetical protein | - |
| NST58_RS01665 (NST58_01665) | - | 341767..341940 (+) | 174 | WP_179089414.1 | hypothetical protein | - |
| NST58_RS01670 (NST58_01670) | - | 341937..342188 (+) | 252 | WP_076304718.1 | hypothetical protein | - |
| NST58_RS01675 (NST58_01675) | - | 342276..342449 (+) | 174 | WP_339245867.1 | hypothetical protein | - |
| NST58_RS01680 (NST58_01680) | - | 342485..342952 (+) | 468 | WP_339245870.1 | YopX family protein | - |
| NST58_RS01685 (NST58_01685) | - | 343184..343609 (+) | 426 | WP_339245872.1 | hypothetical protein | - |
| NST58_RS01690 (NST58_01690) | - | 343744..343983 (+) | 240 | WP_339245874.1 | hypothetical protein | - |
| NST58_RS01695 (NST58_01695) | - | 343946..344290 (+) | 345 | WP_339245876.1 | DUF1064 domain-containing protein | - |
| NST58_RS01700 (NST58_01700) | - | 344287..344484 (+) | 198 | WP_339245879.1 | hypothetical protein | - |
| NST58_RS01705 (NST58_01705) | - | 344595..345623 (+) | 1029 | WP_339245881.1 | hypothetical protein | - |
| NST58_RS01710 (NST58_01710) | - | 345794..346219 (+) | 426 | WP_339245885.1 | hypothetical protein | - |
| NST58_RS01715 (NST58_01715) | - | 346654..346938 (+) | 285 | WP_339245887.1 | hypothetical protein | - |
| NST58_RS01720 (NST58_01720) | - | 347063..347215 (+) | 153 | WP_179087472.1 | hypothetical protein | - |
| NST58_RS01725 (NST58_01725) | - | 347226..347615 (+) | 390 | WP_339245891.1 | terminase small subunit | - |
| NST58_RS01730 (NST58_01730) | - | 347612..349333 (+) | 1722 | WP_339245894.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15880.70 Da Isoelectric Point: 4.7410
>NTDB_id=965128 NST58_RS01565 WP_339245824.1 333761..334183(+) (ssbA) [Paenibacillus sp. FSL R10-2796]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQSGEKEVDFIPIVAWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEVKRVYVTEVIADNVRFLESNSTQSNQQQQQQSNQADPYSGDGKAIDISDDDLPF
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQSGEKEVDFIPIVAWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEVKRVYVTEVIADNVRFLESNSTQSNQQQQQQSNQADPYSGDGKAIDISDDDLPF
Nucleotide
Download Length: 423 bp
>NTDB_id=965128 NST58_RS01565 WP_339245824.1 333761..334183(+) (ssbA) [Paenibacillus sp. FSL R10-2796]
ATGTTAAACCGCATTATATTGATAGGCCGCCTTACTCGTGACCCAGAATTACGGTACACCCCTGCGGGGGTGGCTGTAAC
TCAATTCACACTAGCTGTGGATCGTAACTTCACCGGACAAAGTGGAGAGAAGGAAGTAGATTTCATCCCAATAGTTGCAT
GGAGACAGCTTGCGGAAACGTGTGCTAACTACCTTCGCAAAGGGCGTTTGACAGCAGTAGAGGGTCGCATCCAAGTACGC
AACTACGAAAACAACGAAGTAAAGCGCGTGTACGTTACTGAGGTTATTGCGGATAATGTGCGGTTCCTAGAATCGAATAG
CACTCAGAGTAATCAACAACAGCAGCAACAGAGTAACCAAGCTGATCCTTACAGCGGTGACGGTAAAGCAATCGACATAT
CTGATGATGATCTCCCATTCTGA
ATGTTAAACCGCATTATATTGATAGGCCGCCTTACTCGTGACCCAGAATTACGGTACACCCCTGCGGGGGTGGCTGTAAC
TCAATTCACACTAGCTGTGGATCGTAACTTCACCGGACAAAGTGGAGAGAAGGAAGTAGATTTCATCCCAATAGTTGCAT
GGAGACAGCTTGCGGAAACGTGTGCTAACTACCTTCGCAAAGGGCGTTTGACAGCAGTAGAGGGTCGCATCCAAGTACGC
AACTACGAAAACAACGAAGTAAAGCGCGTGTACGTTACTGAGGTTATTGCGGATAATGTGCGGTTCCTAGAATCGAATAG
CACTCAGAGTAATCAACAACAGCAGCAACAGAGTAACCAAGCTGATCCTTACAGCGGTGACGGTAAAGCAATCGACATAT
CTGATGATGATCTCCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.581 |
100 |
0.621 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
49.412 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.769 |
74.286 |
0.414 |
| ssbA | Streptococcus mutans UA159 |
38.571 |
100 |
0.386 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.857 |
100 |
0.379 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
37.857 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.143 |
100 |
0.371 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.143 |
100 |
0.371 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.143 |
100 |
0.371 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.143 |
100 |
0.371 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
36.429 |
100 |
0.364 |