Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WE862_RS01985 Genome accession   NZ_CP149571
Coordinates   404239..405480 (+) Length   413 a.a.
NCBI ID   WP_339058694.1    Uniprot ID   -
Organism   Aeromonas jandaei strain DSM 7311     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399239..410480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WE862_RS01960 (WE862_01960) ampD 399608..400177 (-) 570 WP_042033204.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WE862_RS01965 (WE862_01965) - 400301..400771 (+) 471 WP_042033202.1 retropepsin-like aspartic protease -
  WE862_RS01970 (WE862_01970) nadC 400775..401632 (+) 858 WP_042033200.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WE862_RS01975 (WE862_01975) - 401955..402383 (+) 429 WP_042033198.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WE862_RS01980 (WE862_01980) pilB 402387..404093 (+) 1707 WP_033115377.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WE862_RS01985 (WE862_01985) pilC 404239..405480 (+) 1242 WP_339058694.1 type II secretion system F family protein Machinery gene
  WE862_RS01990 (WE862_01990) pilD 405503..406375 (+) 873 WP_042033195.1 A24 family peptidase Machinery gene
  WE862_RS01995 (WE862_01995) coaE 406393..407001 (+) 609 WP_042033194.1 dephospho-CoA kinase -
  WE862_RS02000 (WE862_02000) zapD 407046..407768 (+) 723 WP_042033191.1 cell division protein ZapD -
  WE862_RS02005 (WE862_02005) yacG 407772..407972 (+) 201 WP_215805995.1 DNA gyrase inhibitor YacG -
  WE862_RS02010 (WE862_02010) mutT 408045..408449 (-) 405 WP_042033189.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45341.49 Da        Isoelectric Point: 9.6073

>NTDB_id=959885 WE862_RS01985 WP_339058694.1 404239..405480(+) (pilC) [Aeromonas jandaei strain DSM 7311]
MATLTKKTNAPKKVFAFRWQGVNRKGQKVSGELQAENIATVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGEIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYVFFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMSTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=959885 WE862_RS01985 WP_339058694.1 404239..405480(+) (pilC) [Aeromonas jandaei strain DSM 7311]
ATGGCAACGCTGACCAAGAAAACCAATGCCCCGAAAAAAGTCTTCGCCTTTCGCTGGCAAGGGGTAAACCGCAAAGGACA
AAAAGTCTCTGGCGAGCTTCAAGCAGAGAACATAGCCACAGTGAAGGCAGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTTGCCAAGAAGAGTCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATTGCCATCGTATCGCGC
CAGATCACTACCATGCTCTCCGCCGGCGTTCCTCTGGTACAAAGCCTGCAAATCATCGCCCGCAGCCACGAAAAAGCATC
CATGCGCGAACTTATGGGAGAAATTGCCGCTGATGTCGAAACCGGCACCCCCATGTCGGAAGCGCTGCGCCGTCATCCTC
TCTACTTTGACGATCTCTATTGCGATCTAGTGGAAGCTGGCGAGCAGTCCGGCGCGCTGGAAACCATCTATGACCGCATC
GCTACCTACCGCGAGAAATCAGAAGCACTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCAACCATGGTTATCCTGGT
TGCGATTGTCGTTACCTCCATCCTGTTGCTGTTCGTCATCCCGCAATTCGAAGATATCTTCAAAAGCTTCGGTGCCGAGC
TGCCTGCATTTACGCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTACGTTTTCTTCGGCGGAATCGCG
CTGGCCATCTTTCTCTATGTCCGTGCCTGGCGAGCCTCCCAGAAGGTAAAAGACAATACCGACAAGTTTGTGCTCACGAT
TCCGGTAGTCGGGATGATCCTGCACAAAGCAGCCATGGCCCGCTTTGCCCGCACCCTATCCACCACCTTCTCGGCGGGGA
TTCCACTGGTCGATGCCTTGGTTTCAGCTGCTGGCGCCTCAGGTAACTATGTCTATCGCACCGCCGTGATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCGATGAGCACCGTCGATCTTTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCCGGCGCCATAGATGATATGCTCTCCAAGGTCGCCACCATCTTTGAACAGGAGGTCGACGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCTCTTATCATGGTGGTACTGGGGGTGCTGGTTGGCGGTATGGTGGTTGCC
ATGTATCTGCCCATCTTTAAACTGGGGTCAGTTATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

95.884

0.552
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Acinetobacter baylyi ADP1

53.149

96.126

0.511
  pilC Legionella pneumophila strain ERS1305867

51.98

97.821

0.508
  pilC Vibrio campbellii strain DS40M4

46.192

98.547

0.455
  pilC Vibrio cholerae strain A1552

46.734

96.368

0.45
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368