Detailed information NTG0959886

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WE862_RS01990
• Genome accession: NZ_CP149571
• Coordinates: 405503..406375 (+)
• Length: 290 a.a.
• NCBI ID: WP_042033195.1
• Uniprot ID: -
• Organism: Aeromonas jandaei strain DSM 7311
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 400503..411375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WE862_RS01970 (WE862_01970)	nadC	400775..401632 (+)	858	WP_042033200.1	carboxylating nicotinate-nucleotide diphosphorylase	-
WE862_RS01975 (WE862_01975)	-	401955..402383 (+)	429	WP_042033198.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
WE862_RS01980 (WE862_01980)	pilB	402387..404093 (+)	1707	WP_033115377.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
WE862_RS01985 (WE862_01985)	pilC	404239..405480 (+)	1242	WP_339058694.1	type II secretion system F family protein	Machinery gene
WE862_RS01990 (WE862_01990)	pilD	405503..406375 (+)	873	WP_042033195.1	A24 family peptidase	Machinery gene
WE862_RS01995 (WE862_01995)	coaE	406393..407001 (+)	609	WP_042033194.1	dephospho-CoA kinase	-
WE862_RS02000 (WE862_02000)	zapD	407046..407768 (+)	723	WP_042033191.1	cell division protein ZapD	-
WE862_RS02005 (WE862_02005)	yacG	407772..407972 (+)	201	WP_215805995.1	DNA gyrase inhibitor YacG	-
WE862_RS02010 (WE862_02010)	mutT	408045..408449 (-)	405	WP_042033189.1	8-oxo-dGTP diphosphatase MutT	-
WE862_RS02015 (WE862_02015)	secA	408524..411244 (-)	2721	WP_042033186.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32242.57 Da
• Isoelectric Point: 6.4813

>NTDB_id=959886 WE862_RS01990 WP_042033195.1 405503..406375(+) (pilD) [Aeromonas jandaei strain DSM 7311]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFTPDEEQLTEPRYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCGECQAPISARYPLVELLTALLSVAVAMVISPGWGALVALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLIGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAIIGISLIALRKHHQGNPIPFGPYLAIAGWIALLWGDTITRWYLTTIL

Nucleotide

• Length: 873 bp

>NTDB_id=959886 WE862_RS01990 WP_042033195.1 405503..406375(+) (pilD) [Aeromonas jandaei strain DSM 7311]
ATGTTGTTGATCACTGATGTTTTCCATAGCCTCCCCTGGCTCTACTTCTCGTTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCATCGCTTGCCCATTATGTTGGAACGAGAATGGCAGGCTGAATATAGAGGCTACTTCA
CCCCCGATGAAGAGCAATTAACCGAACCGCGCTACAACCTGATGGTACCGCGCTCGGCCTGCCCCCATTGCGGCCATGCC
ATCACCGCACTGGAAAACATCCCGCTGTTAAGCTGGCTCTGGCTCAAAGGGCGCTGTGGTGAGTGCCAAGCCCCTATTTC
GGCCCGCTATCCGCTGGTTGAACTGCTGACAGCGCTGCTCTCGGTGGCCGTAGCCATGGTGATCTCACCGGGTTGGGGTG
CCCTTGTCGCCCTGCTGCTGACCTGGGTATTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCAGACCAG
CTGACCCTGCCGCTGCTGTGGGGCGGTTTGCTGTTCAACCTGATCGGTGGTTTTGCACCGCTTGCTGATGCTGTGATCGG
CGCCATGGCAGGATATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAACTGCTGACCGGCAAGGAAGGGATGGGGTATG
GCGACTTCAAGTTGCTGGCGGCACTGGGAGCCTGGCTCGGCTGGCAGGCACTGCCGATCATACTGCTGCTCTCATCTTTG
GTTGGTGCCATCATCGGCATCTCGCTCATAGCCCTGCGCAAACACCATCAGGGTAACCCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCACCACCATCCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.644	100	0.621
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.913	95.172	0.466