Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WIR04_RS02315 Genome accession   NZ_CP149130
Coordinates   486851..488092 (-) Length   413 a.a.
NCBI ID   WP_338890147.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain BE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 481851..493092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIR04_RS02290 mutT 483819..484223 (+) 405 WP_025328450.1 8-oxo-dGTP diphosphatase MutT -
  WIR04_RS02295 yacG 484298..484492 (-) 195 WP_042053535.1 DNA gyrase inhibitor YacG -
  WIR04_RS02300 zapD 484505..485227 (-) 723 WP_338890141.1 cell division protein ZapD -
  WIR04_RS02305 coaE 485265..485879 (-) 615 WP_338890143.1 dephospho-CoA kinase -
  WIR04_RS02310 pilD 485898..486770 (-) 873 WP_338890145.1 A24 family peptidase Machinery gene
  WIR04_RS02315 pilC 486851..488092 (-) 1242 WP_338890147.1 type II secretion system F family protein Machinery gene
  WIR04_RS02320 pilB 488223..489929 (-) 1707 WP_338890149.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WIR04_RS02325 - 489933..490367 (-) 435 WP_338890151.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WIR04_RS02330 nadC 490678..491541 (-) 864 WP_338890153.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WIR04_RS02335 - 491545..492015 (-) 471 WP_307765790.1 retropepsin-like aspartic protease family protein -
  WIR04_RS02340 ampD 492151..492723 (+) 573 WP_338890157.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45358.37 Da        Isoelectric Point: 9.9972

>NTDB_id=956759 WIR04_RS02315 WP_338890147.1 486851..488092(-) (pilC) [Aeromonas rivipollensis strain BE1]
MATLAQKQNAPKKVFSFRWHGVNRKGQKVSGELQADSITTVKAELRKQGVNVTRVSKQGQGMFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSDALRRHPRHFDALYCDLVEAGEQSGALETIYNRI
AIYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPAFTRFIIAISRFMQDWWYAIFGGIA
LTIFLYVRAWRSSQKVRDNTDKFILSIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTATLAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=956759 WIR04_RS02315 WP_338890147.1 486851..488092(-) (pilC) [Aeromonas rivipollensis strain BE1]
ATGGCAACATTAGCTCAAAAACAAAACGCACCAAAAAAGGTCTTCTCCTTCCGCTGGCATGGTGTCAATCGCAAGGGACA
AAAGGTTTCCGGTGAGTTGCAGGCCGACAGCATCACGACCGTCAAGGCGGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
GGGTCAGCAAGCAGGGCCAGGGGATGTTTTCCAAGGGCGGCGCCAGGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGTGTGCCACTGGTGCAAAGCCTGCAGATCATTGCCCGCGGCCACGAGAAGGCGGC
GGTGCGCGAGCTCATCGGCCAGATCGCCGCCGATGTGGAGACAGGCACCCCACTGTCGGATGCGCTGCGCCGCCACCCCC
GCCACTTCGATGCCCTCTACTGTGATCTGGTGGAGGCGGGGGAGCAGTCAGGCGCGCTGGAAACCATCTACAACCGTATT
GCCATCTATCGCGAGAAGAGCGAGGCGCTCAAATCCAAAATAAAGAAGGCCATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCATAGTGACCTCCATACTGTTGCTGTTCGTCATCCCCCAGTTCGAAGAGATCTTCAAGAGCTTCGGGGCCGAGC
TGCCCGCCTTCACCCGATTCATCATTGCCATCTCCCGCTTCATGCAGGATTGGTGGTACGCCATCTTCGGCGGCATAGCT
CTGACAATATTCCTCTATGTGCGCGCCTGGCGCAGCTCCCAGAAGGTACGTGACAACACCGACAAGTTCATCCTCTCCAT
TCCGGTCGTTGGCAACATACTGCACAAGGCGGCCATGGCCCGTTTCGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCCCTGGTGGATGCCCTGGTCTCTGCTGCCGGGGCCTCTGGCAACTATGTCTATCGCACTGCTACCCTGGCCATTCGC
AACGAAGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTTTTCCCCGACATGGTGATCCAGATGGT
GATGATAGGTGAAGAGTCCGGCGCCATCGACGACATGCTCTCCAAGGTCGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGTCTCACCAGCCTGCTCGAGCCCATCATCATGGTGGTGCTGGGGGTGCTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

95.884

0.528
  pilC Acinetobacter baumannii D1279779

51.87

97.094

0.504
  pilC Legionella pneumophila strain ERS1305867

51.111

98.063

0.501
  pilC Acinetobacter baylyi ADP1

50.882

96.126

0.489
  pilC Vibrio cholerae strain A1552

46.192

98.547

0.455
  pilC Vibrio campbellii strain DS40M4

44.802

97.821

0.438
  pilG Neisseria meningitidis 44/76-A

40.247

98.063

0.395
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilC Thermus thermophilus HB27

37.75

96.852

0.366