Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WIR04_RS02310 Genome accession   NZ_CP149130
Coordinates   485898..486770 (-) Length   290 a.a.
NCBI ID   WP_338890145.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain BE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 480898..491770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIR04_RS02285 secA 480943..483663 (+) 2721 WP_338890138.1 preprotein translocase subunit SecA -
  WIR04_RS02290 mutT 483819..484223 (+) 405 WP_025328450.1 8-oxo-dGTP diphosphatase MutT -
  WIR04_RS02295 yacG 484298..484492 (-) 195 WP_042053535.1 DNA gyrase inhibitor YacG -
  WIR04_RS02300 zapD 484505..485227 (-) 723 WP_338890141.1 cell division protein ZapD -
  WIR04_RS02305 coaE 485265..485879 (-) 615 WP_338890143.1 dephospho-CoA kinase -
  WIR04_RS02310 pilD 485898..486770 (-) 873 WP_338890145.1 A24 family peptidase Machinery gene
  WIR04_RS02315 pilC 486851..488092 (-) 1242 WP_338890147.1 type II secretion system F family protein Machinery gene
  WIR04_RS02320 pilB 488223..489929 (-) 1707 WP_338890149.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WIR04_RS02325 - 489933..490367 (-) 435 WP_338890151.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WIR04_RS02330 nadC 490678..491541 (-) 864 WP_338890153.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32016.28 Da        Isoelectric Point: 6.6284

>NTDB_id=956758 WIR04_RS02310 WP_338890145.1 485898..486770(-) (pilD) [Aeromonas rivipollensis strain BE1]
MVPLIELAQGLPWLYLSLVFLFSLMVGSFLNVVIHRLPIMLEREWLAEYSDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
IGALENIPLLSWLWLKGRCRQCQAPISARYPLVELLTALLSVAVAATLTPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGFILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLNIVL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=956758 WIR04_RS02310 WP_338890145.1 485898..486770(-) (pilD) [Aeromonas rivipollensis strain BE1]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCCCTGATGGTTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCTGGCCGAATACAGTGACTACTTCG
GCAGCGAAGTGGCCACCTCCCCCGCCGAGCCCTACAACCTGATGGTGCCGCGCTCCCGCTGCCCGCACTGCGATCACCCC
ATAGGCGCGCTGGAAAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGGCAATGCCAGGCGCCTATCTC
TGCTCGCTATCCCCTGGTCGAGCTGCTGACAGCCCTGTTGTCGGTCGCCGTTGCAGCGACCCTGACTCCGGGATGGGGCA
CCCTGGCTGCGCTCCTGCTGACCTGGGTACTGGTGGCACTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACGCTGCCGCTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCGGGGGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG
GTCGGCGCCATCATCGGCATAGGGTTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGAACATCGTTCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.189

98.621

0.603
  pilD Vibrio campbellii strain DS40M4

57.439

99.655

0.572
  pilD Acinetobacter nosocomialis M2

53.237

95.862

0.51
  pilD Acinetobacter baumannii D1279779

52.878

95.862

0.507
  pilD Neisseria gonorrhoeae MS11

50

91.724

0.459