Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WJM28_RS18625 Genome accession   NZ_CP149125
Coordinates   4034290..4035531 (+) Length   413 a.a.
NCBI ID   WP_339331829.1    Uniprot ID   -
Organism   Aeromonas caviae strain BE3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4029290..4040531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM28_RS18600 ampD 4029663..4030235 (-) 573 WP_109421774.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WJM28_RS18605 - 4030364..4030834 (+) 471 WP_042015101.1 retropepsin-like aspartic protease -
  WJM28_RS18610 nadC 4030838..4031701 (+) 864 WP_042864860.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WJM28_RS18615 - 4032012..4032179 (+) 168 Protein_3584 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WJM28_RS18620 pilB 4032456..4034162 (+) 1707 WP_041213997.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WJM28_RS18625 pilC 4034290..4035531 (+) 1242 WP_339331829.1 type II secretion system F family protein Machinery gene
  WJM28_RS18630 pilD 4035609..4036484 (+) 876 WP_339331830.1 A24 family peptidase Machinery gene
  WJM28_RS18635 coaE 4036503..4037117 (+) 615 WP_048208563.1 dephospho-CoA kinase -
  WJM28_RS18640 zapD 4037155..4037877 (+) 723 WP_010675825.1 cell division protein ZapD -
  WJM28_RS18645 yacG 4037888..4038082 (+) 195 WP_039040499.1 DNA gyrase inhibitor YacG -
  WJM28_RS18650 mutT 4038140..4038544 (-) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  WJM28_RS18655 - 4038553..4039737 (-) 1185 WP_339331831.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45440.36 Da        Isoelectric Point: 9.8576

>NTDB_id=956693 WJM28_RS18625 WP_339331829.1 4034290..4035531(+) (pilC) [Aeromonas caviae strain BE3]
MATLAQKRNAPKKVFSYRWHGVNRKGQKVSGELQADSITTVKAELRKQGVNVTRVSKQSQGLFSKGGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
AIYREKNEALKSKIKKAMFYPSMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTRFVIAISRFMQEWWYAIFGGAA
LAVFLYVRAWRTSQKVRDNTDKFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTATMAIR
NEVVAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGMLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=956693 WJM28_RS18625 WP_339331829.1 4034290..4035531(+) (pilC) [Aeromonas caviae strain BE3]
ATGGCCACATTAGCTCAAAAACGCAACGCACCGAAAAAAGTCTTCTCCTACCGCTGGCACGGCGTCAACCGCAAGGGACA
GAAGGTCTCAGGCGAGCTGCAAGCCGACAGCATCACCACCGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
GGGTCAGCAAGCAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGCGTGCCTCTGGTGCAGAGTCTTCAGATCATTGCTCGCGGCCACGAGAAAGCGGC
GGTGCGCGAGCTCATCGGCCAGATCGCCGCCGATGTGGAAACGGGCACCCCGCTCTCGGAGGCGTTGCGCCGCCATCCCC
GCCACTTCGACGACCTCTATTGCGACCTGGTCGAGGCCGGGGAGCAATCCGGTGCCCTGGAGACCATCTACGACCGTATC
GCCATCTACCGCGAGAAAAACGAAGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGTCCATGGTCATTCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTCTTCGTCATTCCCCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCGCCTTTACCCGGTTCGTCATCGCCATCTCCCGCTTCATGCAGGAGTGGTGGTACGCCATCTTTGGCGGCGCGGCT
CTCGCCGTCTTCCTCTATGTGCGGGCCTGGCGAACATCCCAGAAGGTCAGGGACAACACGGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATACTGCACAAGGCGGCCATGGCCCGTTTTGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCACTGGTGGATGCCCTGGTCTCAGCGGCCGGAGCATCGGGCAACTATGTCTATCGCACTGCGACCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTTTTCCCCGACATGGTGACCCAGATGGT
GATGATCGGTGAGGAATCCGGCGCCATCGACGACATGCTCTCCAAGGTCGCCGCCATTTTCGAACAGGAGGTGGACGATA
TGGTCGACGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGATGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATTTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Legionella pneumophila strain ERS1305867

52.099

98.063

0.511
  pilC Acinetobacter baylyi ADP1

50.971

99.758

0.508
  pilC Acinetobacter baumannii D1279779

52.12

97.094

0.506
  pilC Vibrio cholerae strain A1552

47.368

96.61

0.458
  pilC Vibrio campbellii strain DS40M4

45.025

97.337

0.438
  pilG Neisseria gonorrhoeae MS11

40.741

98.063

0.4
  pilG Neisseria meningitidis 44/76-A

41.602

93.705

0.39
  pilC Thermus thermophilus HB27

38.75

96.852

0.375