NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	WJM28_RS18630	Genome accession	NZ_CP149125
Coordinates	4035609..4036484 (+)	Length	291 a.a.
NCBI ID	WP_339331830.1	Uniprot ID	-
Organism	Aeromonas caviae strain BE3
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4030609..4041484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJM28_RS18610	nadC	4030838..4031701 (+)	864	WP_042864860.1	carboxylating nicotinate-nucleotide diphosphorylase	-
WJM28_RS18615	-	4032012..4032179 (+)	168	Protein_3584	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
WJM28_RS18620	pilB	4032456..4034162 (+)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
WJM28_RS18625	pilC	4034290..4035531 (+)	1242	WP_339331829.1	type II secretion system F family protein	Machinery gene
WJM28_RS18630	pilD	4035609..4036484 (+)	876	WP_339331830.1	A24 family peptidase	Machinery gene
WJM28_RS18635	coaE	4036503..4037117 (+)	615	WP_048208563.1	dephospho-CoA kinase	-
WJM28_RS18640	zapD	4037155..4037877 (+)	723	WP_010675825.1	cell division protein ZapD	-
WJM28_RS18645	yacG	4037888..4038082 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
WJM28_RS18650	mutT	4038140..4038544 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
WJM28_RS18655	-	4038553..4039737 (-)	1185	WP_339331831.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32018.11 Da Isoelectric Point: 6.6852

                                >NTDB_id=956694 WJM28_RS18630 WP_339331830.1 4035609..4036484(+) (pilD) [Aeromonas caviae strain BE3]

MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH

PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS

LAGAIIGIGLILLHNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=956694 WJM28_RS18630 WP_339331830.1 4035609..4036484(+) (pilD) [Aeromonas caviae strain BE3]

ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG

CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG

GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC

CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT

TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCACTGCTGTCGGTCTCGGTGGCAGCCGCGCTTGCCCCTGGCTGGG

GCACCCTTGCTGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT

CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT

CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAAGAGGGGATGGGGT

ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG

CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCACAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA

TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	55.556	98.969	0.55
pilD	Acinetobacter baumannii D1279779	51.613	95.876	0.495
pilD	Acinetobacter nosocomialis M2	51.613	95.876	0.495
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46

Detailed information NTG0956694