Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WJL51_RS17520 Genome accession   NZ_CP149124
Coordinates   3872261..3873502 (-) Length   413 a.a.
NCBI ID   WP_043126919.1    Uniprot ID   A0AAX3P7B3
Organism   Aeromonas hydrophila strain BE2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3867261..3878502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJL51_RS17490 - 3868101..3869285 (+) 1185 WP_339330057.1 tetratricopeptide repeat protein -
  WJL51_RS17495 mutT 3869294..3869707 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  WJL51_RS17500 yacG 3869768..3869962 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  WJL51_RS17505 zapD 3869972..3870694 (-) 723 WP_024945431.1 cell division protein ZapD -
  WJL51_RS17510 coaE 3870732..3871346 (-) 615 WP_024945430.1 dephospho-CoA kinase -
  WJL51_RS17515 pilD 3871366..3872238 (-) 873 WP_339330058.1 A24 family peptidase Machinery gene
  WJL51_RS17520 pilC 3872261..3873502 (-) 1242 WP_043126919.1 type II secretion system F family protein Machinery gene
  WJL51_RS17525 pilB 3873618..3875333 (-) 1716 WP_200871048.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WJL51_RS17530 - 3875324..3875764 (-) 441 WP_339330059.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WJL51_RS17535 nadC 3876087..3876944 (-) 858 WP_339330060.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WJL51_RS17540 - 3876949..3877419 (-) 471 WP_024944772.1 retropepsin-like aspartic protease -
  WJL51_RS17545 ampD 3877567..3878139 (+) 573 WP_339330061.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45438.58 Da        Isoelectric Point: 9.8637

>NTDB_id=956664 WJL51_RS17520 WP_043126919.1 3872261..3873502(-) (pilC) [Aeromonas hydrophila strain BE2]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LSIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=956664 WJL51_RS17520 WP_043126919.1 3872261..3873502(-) (pilC) [Aeromonas hydrophila strain BE2]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCAATGGACATCGCCGTCGTCTCCCGC
CAGATCACGACTATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTAATGGGCCAAATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAGGCACTGCGCCGTCATCCCC
GCCACTTTGACGATCTTTATTGCGATCTGGTGGAGGCTGGCGAGCAATCCGGCGCGCTGGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTTATCCTGGT
GGCCATTGTCGTCACTTCCATCCTGCTGTTGTTTGTCATTCCCCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGC
TACCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTTTCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGTACCCTTTCCACGACCTTCTCTGCCGGTA
TCCCGCTGGTGGATGCCTTGGTCTCTGCAGCTGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGTTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

51.889

96.126

0.499
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40

98.063

0.392
  pilG Neisseria meningitidis 44/76-A

39.753

98.063

0.39
  pilC Thermus thermophilus HB27

37.75

96.852

0.366