Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WJL51_RS17515 Genome accession   NZ_CP149124
Coordinates   3871366..3872238 (-) Length   290 a.a.
NCBI ID   WP_339330058.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain BE2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3866366..3877238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJL51_RS17490 - 3868101..3869285 (+) 1185 WP_339330057.1 tetratricopeptide repeat protein -
  WJL51_RS17495 mutT 3869294..3869707 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  WJL51_RS17500 yacG 3869768..3869962 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  WJL51_RS17505 zapD 3869972..3870694 (-) 723 WP_024945431.1 cell division protein ZapD -
  WJL51_RS17510 coaE 3870732..3871346 (-) 615 WP_024945430.1 dephospho-CoA kinase -
  WJL51_RS17515 pilD 3871366..3872238 (-) 873 WP_339330058.1 A24 family peptidase Machinery gene
  WJL51_RS17520 pilC 3872261..3873502 (-) 1242 WP_043126919.1 type II secretion system F family protein Machinery gene
  WJL51_RS17525 pilB 3873618..3875333 (-) 1716 WP_200871048.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WJL51_RS17530 - 3875324..3875764 (-) 441 WP_339330059.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WJL51_RS17535 nadC 3876087..3876944 (-) 858 WP_339330060.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32512.82 Da        Isoelectric Point: 6.7410

>NTDB_id=956663 WJL51_RS17515 WP_339330058.1 3871366..3872238(-) (pilD) [Aeromonas hydrophila strain BE2]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQSQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAVTFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIALILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=956663 WJL51_RS17515 WP_339330058.1 3871366..3872238(-) (pilD) [Aeromonas hydrophila strain BE2]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGTCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGCGGCCACGCC
ATCACGGCCATGGAAAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCACTGGTCGTCGCAGTAACATTCCCACCCGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTACTGTTCAATTTGGCAGGGGGATTTGCACCGCTTGCCGATGCAGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAACTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGCTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTACTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.702

98.276

0.597
  pilD Vibrio campbellii strain DS40M4

56.098

98.966

0.555
  pilD Acinetobacter baumannii D1279779

54.225

97.931

0.531
  pilD Acinetobacter nosocomialis M2

54.225

97.931

0.531
  pilD Neisseria gonorrhoeae MS11

48.718

94.138

0.459