Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WD047_RS02425 Genome accession   NZ_CP148749
Coordinates   516963..518204 (-) Length   413 a.a.
NCBI ID   WP_139748841.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain AH230115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511963..523204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WD047_RS02395 - 512804..513988 (+) 1185 WP_338883560.1 tetratricopeptide repeat protein -
  WD047_RS02400 mutT 513997..514410 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  WD047_RS02405 yacG 514471..514665 (-) 195 WP_139748838.1 DNA gyrase inhibitor YacG -
  WD047_RS02410 zapD 514675..515397 (-) 723 WP_024945431.1 cell division protein ZapD -
  WD047_RS02415 coaE 515435..516049 (-) 615 WP_219305925.1 dephospho-CoA kinase -
  WD047_RS02420 pilD 516068..516940 (-) 873 WP_139748840.1 A24 family peptidase Machinery gene
  WD047_RS02425 pilC 516963..518204 (-) 1242 WP_139748841.1 type II secretion system F family protein Machinery gene
  WD047_RS02430 pilB 518320..520026 (-) 1707 WP_139748842.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WD047_RS02435 - 520031..520495 (-) 465 WP_139748843.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WD047_RS02440 nadC 520818..521675 (-) 858 WP_139748844.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WD047_RS02445 - 521681..522151 (-) 471 WP_024944772.1 retropepsin-like aspartic protease -
  WD047_RS02450 ampD 522298..522870 (+) 573 WP_139748845.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45466.59 Da        Isoelectric Point: 9.8734

>NTDB_id=955417 WD047_RS02425 WP_139748841.1 516963..518204(-) (pilC) [Aeromonas hydrophila strain AH230115]
MATLTQKQNAPRKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QVTTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LSIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAIMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=955417 WD047_RS02425 WP_139748841.1 516963..518204(-) (pilC) [Aeromonas hydrophila strain AH230115]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAGGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGGTCACCACCATGCTGTCGGCCGGTGTACCTCTGGTCCAGAGCTTGCAAATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGTGAGCTCATGGGGCAGATTGCAGCCGATGTGGAGACCGGCACGCCCATGTCCGAGGCACTGCGCCGCCATCCCC
GCCACTTTGACGATCTTTATTGCGATCTCGTGGAGGCTGGCGAGCAGTCCGGCGCTCTGGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCGGAAGCACTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTTGTTACCTCCATCCTGCTGCTGTTTGTCATTCCCCAGTTCGAGGACATCTTCAAGAGCTTCGGTGCCGAGC
TTCCCATTTTTACCCAGTTTGTCATCGGCATCTCCCGTTTCATGCAGAATTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTTTCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATACTGACCAT
TCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGTACCCTCTCCACCACCTTCTCTGCTGGTA
TCCCGCTGGTGGATGCCTTGGTTTCTGCAGCTGGCGCCTCCGGCAACTATGTCTACCGTACTGCCATCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAAATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

51.637

96.126

0.496
  pilC Vibrio cholerae strain A1552

47.666

98.547

0.47
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

39.851

97.821

0.39
  pilG Neisseria meningitidis 44/76-A

39.604

97.821

0.387
  pilC Thermus thermophilus HB27

37.5

96.852

0.363