Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFELB_RS00105 Genome accession   NZ_CP172850
Coordinates   22391..23479 (+) Length   362 a.a.
NCBI ID   WP_034053897.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 238638E_ID017     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17391..28479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELB_RS00085 (ACFELB_00085) rsmB 18286..19590 (-) 1305 WP_395479254.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACFELB_RS00090 (ACFELB_00090) fmt 19587..20531 (-) 945 WP_196692180.1 methionyl-tRNA formyltransferase -
  ACFELB_RS00095 (ACFELB_00095) def 20586..21092 (-) 507 WP_003107059.1 peptide deformylase -
  ACFELB_RS00100 (ACFELB_00100) tsaP 21231..22256 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACFELB_RS00105 (ACFELB_00105) dprA 22391..23479 (+) 1089 WP_034053897.1 DNA-processing protein DprA Machinery gene
  ACFELB_RS00110 (ACFELB_00110) - 23520..24077 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  ACFELB_RS00115 (ACFELB_00115) - 24087..25064 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  ACFELB_RS00120 (ACFELB_00120) hemF 25255..26172 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  ACFELB_RS00125 (ACFELB_00125) aroE 26230..27054 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  ACFELB_RS00130 (ACFELB_00130) - 27165..28151 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37761.28 Da        Isoelectric Point: 7.0742

>NTDB_id=954684 ACFELB_RS00105 WP_034053897.1 22391..23479(+) (dprA) [Pseudomonas aeruginosa strain 238638E_ID017]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPVEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGTPETLERPQLAMVGSRRASPTGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=954684 ACFELB_RS00105 WP_034053897.1 22391..23479(+) (dprA) [Pseudomonas aeruginosa strain 238638E_ID017]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTCCCTG
TCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCACCCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCACCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCTTGGCGCAGGGCGGCTTTGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.69

98.066

0.409
  dprA Legionella pneumophila strain ERS1305867

50

80.11

0.401
  dprA Acinetobacter baumannii D1279779

38.462

100

0.387
  dprA Acinetobacter baumannii strain A118

38.81

97.514

0.378
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

44.667

82.873

0.37
  dprA Neisseria meningitidis strain C311

44.667

82.873

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37