Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QMM10_RS10385 Genome accession   NZ_AP025938
Coordinates   2047231..2047893 (-) Length   220 a.a.
NCBI ID   WP_281737396.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2042231..2052893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS10360 (PC1044_20010) - 2042380..2042646 (-) 267 WP_001278167.1 Veg family protein -
  QMM10_RS10365 (PC1044_20020) dnaB 2042648..2044000 (-) 1353 WP_000852486.1 replicative DNA helicase -
  QMM10_RS10370 (PC1044_20030) rplI 2044044..2044496 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  QMM10_RS10375 (PC1044_20040) - 2044493..2046466 (-) 1974 WP_000715111.1 DHH family phosphoesterase -
  QMM10_RS10380 (PC1044_20050) raiA 2046603..2047151 (-) 549 WP_000599104.1 ribosome-associated translation inhibitor RaiA -
  QMM10_RS10385 (PC1044_20060) comFC/cflB 2047231..2047893 (-) 663 WP_281737396.1 ComF family protein Machinery gene
  QMM10_RS10390 (PC1044_20070) comFA/cflA 2047890..2049188 (-) 1299 WP_050207064.1 DEAD/DEAH box helicase Machinery gene
  QMM10_RS10395 (PC1044_20080) - 2049244..2049879 (+) 636 WP_000395739.1 YigZ family protein -
  QMM10_RS10400 (PC1044_20090) cysK 2050164..2051090 (+) 927 WP_000029873.1 cysteine synthase A -
  QMM10_RS10405 (PC1044_20100) tsf 2051211..2052251 (-) 1041 WP_000808063.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25291.11 Da        Isoelectric Point: 7.3688

>NTDB_id=95399 QMM10_RS10385 WP_281737396.1 2047231..2047893(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900701057]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGSTINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=95399 QMM10_RS10385 WP_281737396.1 2047231..2047893(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900701057]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGATCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae Rx1

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae D39

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae R6

98.636

100

0.986
  comFC/cflB Streptococcus mitis SK321

92.273

100

0.923
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914

Multiple sequence alignment