Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WE348_RS14580 Genome accession   NZ_CP147978
Coordinates   3373483..3374691 (+) Length   402 a.a.
NCBI ID   WP_338852062.1    Uniprot ID   -
Organism   Alteromonas macleodii strain KD01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368483..3379691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WE348_RS14555 (WE348_14555) ampE 3369324..3370226 (-) 903 WP_338852058.1 beta-lactamase regulator AmpE -
  WE348_RS14560 (WE348_14560) ampD 3370269..3370808 (-) 540 WP_069944747.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WE348_RS14565 (WE348_14565) - 3370992..3371510 (+) 519 WP_014977216.1 TIGR02281 family clan AA aspartic protease -
  WE348_RS14570 (WE348_14570) nadC 3371543..3372397 (+) 855 WP_131138172.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WE348_RS14575 (WE348_14575) pilA2 3372967..3373392 (+) 426 WP_338852060.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WE348_RS14580 (WE348_14580) pilC 3373483..3374691 (+) 1209 WP_338852062.1 type II secretion system F family protein Machinery gene
  WE348_RS14585 (WE348_14585) pilD 3374744..3375637 (+) 894 WP_338852064.1 A24 family peptidase Machinery gene
  WE348_RS14590 (WE348_14590) coaE 3375656..3376267 (+) 612 WP_283625637.1 dephospho-CoA kinase -
  WE348_RS14595 (WE348_14595) zapD 3376511..3377263 (+) 753 WP_039227984.1 cell division protein ZapD -
  WE348_RS14600 (WE348_14600) yacG 3377397..3377624 (+) 228 WP_014950407.1 DNA gyrase inhibitor YacG -
  WE348_RS14605 (WE348_14605) - 3377845..3378717 (+) 873 WP_239300629.1 aspartoacylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43676.28 Da        Isoelectric Point: 9.4313

>NTDB_id=949812 WE348_RS14580 WP_338852062.1 3373483..3374691(+) (pilC) [Alteromonas macleodii strain KD01]
MAKATATFTWQGKDRNGQSRKGEISATSLQEAKNLLRRQGISANKVKRLAKPLFGGGQKITPADIAVISRQIATMLAAGV
TLIQSLEMISQGHANSSMRKLLGEITEEVKAGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVVVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAIGIGGAGFMFMRTY
KRSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYMRKEVAGGMPMH
VAMRATQVFPDMVTQMIAIGEESGAVDEMLSKVATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=949812 WE348_RS14580 WP_338852062.1 3373483..3374691(+) (pilC) [Alteromonas macleodii strain KD01]
ATGGCAAAAGCAACGGCAACTTTTACTTGGCAAGGCAAAGACAGGAATGGTCAATCTCGCAAAGGTGAAATTTCCGCCAC
TTCGCTTCAAGAAGCTAAGAACCTTTTGCGTCGACAAGGCATCTCTGCAAATAAAGTAAAGCGGCTAGCTAAGCCATTGT
TCGGCGGTGGACAAAAAATCACACCCGCAGACATAGCTGTCATTTCCCGTCAAATAGCTACTATGCTGGCTGCTGGCGTT
ACGCTAATTCAATCATTAGAAATGATTTCTCAAGGTCACGCGAATTCGTCAATGCGAAAGCTCCTTGGAGAAATAACTGA
GGAAGTAAAAGCGGGTAATCCACTTTCATCTGCCTTAAGAAAACACCCTTTGTATTTTGACGATTTATATTGCGATTTGG
TTTATACCGGTGAGCAGTCGGGCGCACTTGAAACCATTTATGACCGCATTGCGACCTACAAAGAAAAGGCCGAAGCACTA
AAATCAAAAATCAAAAAAGCGATGTTTTACCCTATCGCAGTCGTAGTCGTTGCTTTTATTGTAACGACCATCCTTCTTAT
ATTTGTTGTACCGCAGTTTGAAGAAATATTCAGCAGCTTTGGCGCAGAGCTTCCTGCCTTCACCCAGTTCGTTTTGGCTA
TTTCCCGATTTGTACAAGACTACGGTATTTTTATTGCTATAGGTATTGGTGGTGCGGGCTTTATGTTTATGCGCACCTAT
AAGCGAAGCCAGAAGCTACGTGACACGGTAGACCGCAACATTTTAAAAATACCCGTTATCGGAGAGATACTAAAAAAAGC
CAGTATTGCGCGCTTTACCCGAACCCTAGCCACGACTTTTGCCGCTGGTGTGCCGCTTATTGGCGCATTAGAATCCGCCG
CTGGAGCTTCGGGCAACGCGGTATACCGAGAAGCCATTTTATACATGCGTAAAGAAGTGGCGGGCGGTATGCCAATGCAT
GTTGCAATGCGCGCTACACAAGTATTCCCTGACATGGTGACGCAGATGATTGCCATCGGTGAGGAGTCGGGCGCGGTTGA
TGAAATGCTTAGTAAAGTTGCCACCATATACGAAGCTGAAGTAGATGATATGGTAGACGGTCTAACCAGCCTACTTGAAC
CTATGATCATGGCCGTACTTGGCGTGGTAATCGGCGGCTTGATTGTGGCTATGTACCTCCCTATATTCGAAATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.045

99.005

0.585
  pilC Acinetobacter baumannii D1279779

52.605

100

0.527
  pilC Acinetobacter baylyi ADP1

52.645

98.756

0.52
  pilC Legionella pneumophila strain ERS1305867

52.645

98.756

0.52
  pilC Vibrio cholerae strain A1552

46.305

100

0.468
  pilG Neisseria meningitidis 44/76-A

44.802

100

0.45
  pilG Neisseria gonorrhoeae MS11

44.554

100

0.448
  pilC Vibrio campbellii strain DS40M4

43.325

98.756

0.428
  pilC Thermus thermophilus HB27

37.562

100

0.376